Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
MMAR_2019Conserved hypothetical protein. (239 aa)    
Predicted Functional Partners:
MMAR_3746
Conserved hypothetical protein; Function unknown but contains esterase/acetylhydrolase superfamily domain.
 
  
 0.777
MMAR_1133
Conserved hypothetical protein.
  
     0.764
MMAR_3230
Conserved hypothetical protein.
  
     0.726
MMAR_4354
Conserved hypothetical transmembrane protein.
  
     0.711
MMAR_1682
Conserved protein; Belongs to the glycosyl hydrolase 57 family.
  
     0.677
MMAR_0513
Conserved hypothetical protein; In M. tuberculosis this gene is down regulated by HspR|Rv0353.
  
     0.655
lpqM
Lipoprotein peptidase LpqM; Function unknown, possibly hydrolyzes peptides and/or proteins.
 
     0.644
MMAR_1180
N-term fused in-frame with fatty acyl-AMP ligase FadD28_1; Synthesis of unknown polyketide.
  
 0.632
MMAR_3099
Polyketide synthase and peptide synthetase; Production of unknown metabolite. this CDS encodes a single NRP and PKS module with domain structure: (KS, Ata, DH, ER, KR, ACP).
  
 0.632
MMAR_3026
Conserved hypothetical protein.
  
     0.623
Your Current Organism:
Mycobacterium marinum
NCBI taxonomy Id: 216594
Other names: M. marinum M, Mycobacterium marinum M, Mycobacterium marinum str. M, Mycobacterium marinum strain M
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