Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
vapCConserved hypothetical alanine rich protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family. (144 aa)    
Predicted Functional Partners:
MMAR_2822
PPE family protein.
  
     0.608
MMAR_4995
PE-PGRS family protein.
  
     0.608
MMAR_0642
PPE family protein.
  
     0.606
MMAR_3254
Conserved hypothetical integral membrane protein; Function unknown but domain identity with chloride channel superfamily.
  
     0.605
MMAR_4489
Conserved hypothetical membrane protein.
  
     0.595
MMAR_2695
PE-PGRS family protein, PE_PGRS9_1.
  
     0.589
MMAR_1639
PPE family protein.
  
     0.588
MMAR_2100
PE-PGRS family protein.
  
     0.588
MMAR_0943
PE-PGRS family protein.
  
     0.586
MMAR_4621
PPE family protein.
  
     0.583
Your Current Organism:
Mycobacterium marinum
NCBI taxonomy Id: 216594
Other names: M. marinum M, Mycobacterium marinum M, Mycobacterium marinum str. M, Mycobacterium marinum strain M
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