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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lppMConserved lipoprotein LppM. (242 aa)    
Predicted Functional Partners:
atpB
ATP synthase a chain AtpB; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane.
      
 0.928
MMAR_3205
Conserved hypothetical protein; Function unknown but contains acyl-CoA N- acyltransferase superfamily domain.
       0.784
MMAR_1980
Conserved membrane protein.
  
     0.758
MMAR_0012
Conserved hypothetical membrane protein.
  
     0.755
MMAR_1353
Conserved hypothetical protein.
 
     0.728
MMAR_0902
Conserved hypothetical membrane protein.
  
     0.726
MMAR_0679
Conserved hypothetical protein.
  
     0.722
MMAR_5298
Conserved hypothetical protein.
  
     0.713
MMAR_5400
Conserved protein.
  
     0.706
MMAR_4356
Conserved protein.
  
     0.703
Your Current Organism:
Mycobacterium marinum
NCBI taxonomy Id: 216594
Other names: M. marinum M, Mycobacterium marinum M, Mycobacterium marinum str. M, Mycobacterium marinum strain M
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