STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MMAR_4792acyl-CoA dehydrogenase; Involved in lipid metabolism. (301 aa)    
Predicted Functional Partners:
MMAR_4791
acyl-CoA dehydrogenase; Involved in lipid metabolism.
 
     0.961
MMAR_4790
enoyl-CoA hydratase; Lipid metabolism.
 
 0.939
MMAR_4793
acyl-CoA synthetase.
  
  
 0.865
MMAR_4731
3-ketoacyl-CoA thiolase; Function unknown, supposed involvement in lipid metabolism. may have specificity for branched-chain acyl CoAs.
 
 0.771
MMAR_4010
acyl-CoA dehydrogenase; Function unknown, but involved in lipid degradation.
  
     0.758
MMAR_4718
acyl-CoA dehydrogenase; Function unknown, but supposed involvement in lipid degradation.
  
     0.758
MMAR_4748
acyl-CoA dehydrogenase; Function unknown, but involved in lipid degradation.
  
     0.755
MMAR_4751
acyl-CoA dehydrogenase; Function unknown, but supposed involvement in lipid degradation.
  
     0.753
fadB
Fatty oxidation protein FadB; Involved in fatty acid degradation (probably in fatty acid beta-oxidation cycle).
  
 0.747
MMAR_3992
acyl-CoA dehydrogenase; Function unknown, but involved in lipid degradation.
  
     0.742
Your Current Organism:
Mycobacterium marinum
NCBI taxonomy Id: 216594
Other names: M. marinum M, Mycobacterium marinum M, Mycobacterium marinum str. M, Mycobacterium marinum strain M
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