STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY57159.1Pteridine-dependent deoxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (320 aa)    
Predicted Functional Partners:
AHY57172.1
FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.705
AHY57162.1
Acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.699
AHY57161.1
Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.644
AHY59021.1
Translation elongation factor G; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.633
fusA
Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.
   
  0.633
AHY57222.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.578
AHY57171.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.550
AHY57166.1
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.543
AHY57164.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.539
AHY57167.1
Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.539
Your Current Organism:
Stenotrophomonas rhizophila
NCBI taxonomy Id: 216778
Other names: ATCC BAA-473, CCUG 47042, DSM 14405, JCM 13333, S. rhizophila, Stenotrophomonas rhizophila Wolf et al. 2002, strain e-p10
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