Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AHY57686.1Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (605 aa)    
Predicted Functional Partners:
AHY57687.1
Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.958
AHY57688.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.951
AHY57566.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.909
AHY60449.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.883
AHY60786.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.864
AHY59038.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.861
AHY57377.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.845
AHY59920.1
Circadian clock protein KaiC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.842
AHY57107.1
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.832
AHY58685.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.829
Your Current Organism:
Stenotrophomonas rhizophila
NCBI taxonomy Id: 216778
Other names: ATCC BAA-473, CCUG 47042, DSM 14405, JCM 13333, S. rhizophila, Stenotrophomonas rhizophila Wolf et al. 2002, strain e-p10
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