Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AHY57883.1Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (278 aa)    
Predicted Functional Partners:
AHY57882.1
Pilus assembly protein PilM; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.999
AHY57884.1
Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.998
AHY57886.1
Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.997
AHY57885.1
Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.996
AHY57523.1
Peptidoglycan-binding protein LysM; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.914
AHY60039.1
Pilus assembly protein PilZ; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.835
AHY59292.1
Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.820
AHY59562.1
Pre-pilin like leader sequence; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.801
AHY59557.1
Pilus assembly protein PilE; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.795
AHY59558.1
Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.788
Your Current Organism:
Stenotrophomonas rhizophila
NCBI taxonomy Id: 216778
Other names: ATCC BAA-473, CCUG 47042, DSM 14405, JCM 13333, S. rhizophila, Stenotrophomonas rhizophila Wolf et al. 2002, strain e-p10
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