Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AHY57977.1RNA polymerase sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (164 aa)    
Predicted Functional Partners:
AHY57976.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.964
AHY57273.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.820
AHY57815.1
Iron dicitrate transport regulator FecR; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.820
AHY58370.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.818
AHY59883.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.816
AHY57271.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.763
AHY57272.1
RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.721
AHY58152.1
Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.656
AHY57389.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.649
AHY59023.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.639
Your Current Organism:
Stenotrophomonas rhizophila
NCBI taxonomy Id: 216778
Other names: ATCC BAA-473, CCUG 47042, DSM 14405, JCM 13333, S. rhizophila, Stenotrophomonas rhizophila Wolf et al. 2002, strain e-p10
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