STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY59176.1RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (384 aa)    
Predicted Functional Partners:
macB
Macrolide transporter; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
 
 
 0.962
AHY59175.1
Acriflavine resistance protein B; Derived by automated computational analysis using gene prediction method: Protein Homology.
   0.857
AHY57654.1
Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
   0.854
AHY58547.1
Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
   0.853
AHY59399.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
   0.835
AHY57655.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.827
AHY59658.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.791
AHY57749.1
RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.785
AHY59397.1
RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.774
AHY59665.1
Multidrug RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.772
Your Current Organism:
Stenotrophomonas rhizophila
NCBI taxonomy Id: 216778
Other names: ATCC BAA-473, CCUG 47042, DSM 14405, JCM 13333, S. rhizophila, Stenotrophomonas rhizophila Wolf et al. 2002, strain e-p10
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