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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY60869.1Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (726 aa)    
Predicted Functional Partners:
AHY60870.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.962
AHY60868.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.961
AHY60867.1
Von Willebrand factor A; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.958
AHY60865.1
Twin-arginine translocation pathway signal; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.921
AHY60864.1
Peptidase C69; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.919
AHY60863.1
TldD protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.902
AHY60862.1
TldD protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.854
AHY60866.1
ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.838
AHY60871.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.505
Your Current Organism:
Stenotrophomonas rhizophila
NCBI taxonomy Id: 216778
Other names: ATCC BAA-473, CCUG 47042, DSM 14405, JCM 13333, S. rhizophila, Stenotrophomonas rhizophila Wolf et al. 2002, strain e-p10
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