STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ88485.1Tetratricopeptide repeat-containing protein. (379 aa)    
Predicted Functional Partners:
SHK63678.1
Signal transduction histidine kinase.
  
 
 0.990
SHK63698.1
His Kinase A (phospho-acceptor) domain-containing protein.
  
 0.981
SHK54844.1
Signal transduction histidine kinase.
  
 
 0.946
SHJ88466.1
Helix-turn-helix domain-containing protein.
 
     0.934
ribB
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
 0.924
SHJ94082.1
Signal transduction histidine kinase.
 
 
 0.901
SHK00568.1
Tetratricopeptide repeat-containing protein.
 
 0.826
SHK14670.1
Tetratricopeptide repeat-containing protein.
 
 0.791
SHK06828.1
Hypothetical protein.
   
 0.789
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
  
 
  0.765
Your Current Organism:
Chryseobacterium molle
NCBI taxonomy Id: 216903
Other names: C. molle, CCUG 52547, Chryseobacterium molle Herzog et al. 2008, Chryseobacterium sp. DW3, DSM 18016, strain DW3
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