Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHJ94182.1 | SHJ94220.1 | SAMN05444371_0378 | SAMN05444371_0380 | Uncharacterized Fe-S cluster protein YjdI. | Hypothetical protein. | 0.955 |
SHJ94182.1 | SHJ95047.1 | SAMN05444371_0378 | SAMN05444371_0419 | Uncharacterized Fe-S cluster protein YjdI. | General stress protein 26. | 0.546 |
SHJ94220.1 | SHJ94182.1 | SAMN05444371_0380 | SAMN05444371_0378 | Hypothetical protein. | Uncharacterized Fe-S cluster protein YjdI. | 0.955 |
SHJ94220.1 | SHJ95047.1 | SAMN05444371_0380 | SAMN05444371_0419 | Hypothetical protein. | General stress protein 26. | 0.504 |
SHJ94220.1 | SHK43185.1 | SAMN05444371_0380 | SAMN05444371_2423 | Hypothetical protein. | Hypothetical protein. | 0.402 |
SHJ94974.1 | SHJ95023.1 | SAMN05444371_0416 | SAMN05444371_0418 | Bifunctional non-homologous end joining protein LigD. | NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family. | 0.557 |
SHJ94974.1 | SHJ95047.1 | SAMN05444371_0416 | SAMN05444371_0419 | Bifunctional non-homologous end joining protein LigD. | General stress protein 26. | 0.480 |
SHJ94974.1 | SHJ95075.1 | SAMN05444371_0416 | SAMN05444371_0420 | Bifunctional non-homologous end joining protein LigD. | Putative mRNA 3-end processing factor. | 0.653 |
SHJ94974.1 | SHJ95092.1 | SAMN05444371_0416 | SAMN05444371_0421 | Bifunctional non-homologous end joining protein LigD. | DNA ligase-1. | 0.810 |
SHJ94974.1 | ku | SAMN05444371_0416 | SAMN05444371_0417 | Bifunctional non-homologous end joining protein LigD. | DNA end-binding protein Ku; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.979 |
SHJ95023.1 | SHJ94974.1 | SAMN05444371_0418 | SAMN05444371_0416 | NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family. | Bifunctional non-homologous end joining protein LigD. | 0.557 |
SHJ95023.1 | SHJ95047.1 | SAMN05444371_0418 | SAMN05444371_0419 | NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family. | General stress protein 26. | 0.775 |
SHJ95023.1 | SHJ95075.1 | SAMN05444371_0418 | SAMN05444371_0420 | NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family. | Putative mRNA 3-end processing factor. | 0.460 |
SHJ95023.1 | SHJ95092.1 | SAMN05444371_0418 | SAMN05444371_0421 | NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family. | DNA ligase-1. | 0.412 |
SHJ95023.1 | ku | SAMN05444371_0418 | SAMN05444371_0417 | NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family. | DNA end-binding protein Ku; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.617 |
SHJ95047.1 | SHJ94182.1 | SAMN05444371_0419 | SAMN05444371_0378 | General stress protein 26. | Uncharacterized Fe-S cluster protein YjdI. | 0.546 |
SHJ95047.1 | SHJ94220.1 | SAMN05444371_0419 | SAMN05444371_0380 | General stress protein 26. | Hypothetical protein. | 0.504 |
SHJ95047.1 | SHJ94974.1 | SAMN05444371_0419 | SAMN05444371_0416 | General stress protein 26. | Bifunctional non-homologous end joining protein LigD. | 0.480 |
SHJ95047.1 | SHJ95023.1 | SAMN05444371_0419 | SAMN05444371_0418 | General stress protein 26. | NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family. | 0.775 |
SHJ95047.1 | SHJ95075.1 | SAMN05444371_0419 | SAMN05444371_0420 | General stress protein 26. | Putative mRNA 3-end processing factor. | 0.637 |
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