STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ96673.1Ferritin-like metal-binding protein YciE. (194 aa)    
Predicted Functional Partners:
SHJ96653.1
Hypothetical protein.
       0.636
SHJ94974.1
Bifunctional non-homologous end joining protein LigD.
 
     0.597
SHJ96644.1
Hypothetical protein.
 
     0.576
SHJ94958.1
Bifunctional non-homologous end joining protein LigD.
 
     0.575
SHJ96705.1
Hypothetical protein.
 
     0.537
SHJ96741.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
     0.474
SHJ95047.1
General stress protein 26.
  
     0.466
SHK33175.1
Low affinity Fe/Cu permease.
  
    0.457
SHJ96691.1
Hypothetical protein.
       0.454
SHK55082.1
Low affinity Fe/Cu permease.
  
    0.453
Your Current Organism:
Chryseobacterium molle
NCBI taxonomy Id: 216903
Other names: C. molle, CCUG 52547, Chryseobacterium molle Herzog et al. 2008, Chryseobacterium sp. DW3, DSM 18016, strain DW3
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