STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ98732.1Ribokinase. (296 aa)    
Predicted Functional Partners:
SHK12208.1
Ribose-phosphate pyrophosphokinase.
   
 0.936
SHK25026.1
Ribose 5-phosphate isomerase B.
  
 
 0.914
SHK63987.1
Phosphoglucomutase.
   
 
 0.911
SHK00697.1
Transketolase.
    
  0.909
SHK00717.1
Transketolase.
    
  0.909
SHK06245.1
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate.
    
 0.775
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
  
 
 0.731
SHJ98760.1
Protein of unknown function.
 
     0.643
SHJ90481.1
Transketolase.
    
  0.628
SHJ90504.1
Transketolase.
    
  0.628
Your Current Organism:
Chryseobacterium molle
NCBI taxonomy Id: 216903
Other names: C. molle, CCUG 52547, Chryseobacterium molle Herzog et al. 2008, Chryseobacterium sp. DW3, DSM 18016, strain DW3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.