STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK02009.1Hypothetical protein. (712 aa)    
Predicted Functional Partners:
rlmF
23S rRNA m(6)A-1618 methyltransferase; Specifically methylates the adenine in position 1618 of 23S rRNA.
       0.773
SHK41089.1
Starch-binding associating with outer membrane.
  
     0.755
SHK41108.1
Concanavalin A-like lectin/glucanases superfamily protein.
 
     0.755
SHK41071.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.739
SHK01973.1
Uncharacterized conserved protein YegJ, DUF2314 family.
       0.718
SHJ95826.1
F5/8 type C domain-containing protein.
 
     0.566
SHK02035.1
Cytochrome c.
       0.528
lysS
lysyl-tRNA synthetase, class II; Belongs to the class-II aminoacyl-tRNA synthetase family.
       0.419
SHK45928.1
Regulatory protein, luxR family.
  
     0.413
Your Current Organism:
Chryseobacterium molle
NCBI taxonomy Id: 216903
Other names: C. molle, CCUG 52547, Chryseobacterium molle Herzog et al. 2008, Chryseobacterium sp. DW3, DSM 18016, strain DW3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.