Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHJ96705.1 | SHK01042.1 | SAMN05444371_0504 | SAMN05444371_0760 | Hypothetical protein. | Succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase. | 0.559 |
SHJ96705.1 | SHK35391.1 | SAMN05444371_0504 | SAMN05444371_2054 | Hypothetical protein. | Succinate dehydrogenase / fumarate reductase iron-sulfur subunit. | 0.837 |
SHJ96705.1 | SHK35471.1 | SAMN05444371_0504 | SAMN05444371_2057 | Hypothetical protein. | Succinate dehydrogenase subunit A. | 0.937 |
SHJ96705.1 | SHK35491.1 | SAMN05444371_0504 | SAMN05444371_2058 | Hypothetical protein. | Succinate dehydrogenase / fumarate reductase cytochrome b subunit. | 0.530 |
SHJ96705.1 | SHK65133.1 | SAMN05444371_0504 | SAMN05444371_3181 | Hypothetical protein. | 2-oxoglutarate dehydrogenase E1 component. | 0.481 |
SHJ96705.1 | argH | SAMN05444371_0504 | SAMN05444371_2525 | Hypothetical protein. | Argininosuccinate lyase. | 0.505 |
SHJ96705.1 | fumC | SAMN05444371_0504 | SAMN05444371_1411 | Hypothetical protein. | Fumarase, class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. | 0.488 |
SHJ96705.1 | sucC | SAMN05444371_0504 | SAMN05444371_1064 | Hypothetical protein. | succinyl-CoA synthetase beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | 0.722 |
SHJ96705.1 | sucD | SAMN05444371_0504 | SAMN05444371_0797 | Hypothetical protein. | succinyl-CoA synthetase alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. | 0.774 |
SHK01042.1 | SHJ96705.1 | SAMN05444371_0760 | SAMN05444371_0504 | Succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase. | Hypothetical protein. | 0.559 |
SHK01042.1 | SHK35391.1 | SAMN05444371_0760 | SAMN05444371_2054 | Succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase. | Succinate dehydrogenase / fumarate reductase iron-sulfur subunit. | 0.916 |
SHK01042.1 | SHK35471.1 | SAMN05444371_0760 | SAMN05444371_2057 | Succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase. | Succinate dehydrogenase subunit A. | 0.931 |
SHK01042.1 | SHK65133.1 | SAMN05444371_0760 | SAMN05444371_3181 | Succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase. | 2-oxoglutarate dehydrogenase E1 component. | 0.916 |
SHK01042.1 | fumC | SAMN05444371_0760 | SAMN05444371_1411 | Succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase. | Fumarase, class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. | 0.918 |
SHK35391.1 | SHJ96705.1 | SAMN05444371_2054 | SAMN05444371_0504 | Succinate dehydrogenase / fumarate reductase iron-sulfur subunit. | Hypothetical protein. | 0.837 |
SHK35391.1 | SHK01042.1 | SAMN05444371_2054 | SAMN05444371_0760 | Succinate dehydrogenase / fumarate reductase iron-sulfur subunit. | Succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase. | 0.916 |
SHK35391.1 | SHK35471.1 | SAMN05444371_2054 | SAMN05444371_2057 | Succinate dehydrogenase / fumarate reductase iron-sulfur subunit. | Succinate dehydrogenase subunit A. | 0.999 |
SHK35391.1 | SHK35491.1 | SAMN05444371_2054 | SAMN05444371_2058 | Succinate dehydrogenase / fumarate reductase iron-sulfur subunit. | Succinate dehydrogenase / fumarate reductase cytochrome b subunit. | 0.998 |
SHK35391.1 | SHK37153.1 | SAMN05444371_2054 | SAMN05444371_2129 | Succinate dehydrogenase / fumarate reductase iron-sulfur subunit. | Fumarylacetoacetate hydrolase. | 0.912 |
SHK35391.1 | SHK65133.1 | SAMN05444371_2054 | SAMN05444371_3181 | Succinate dehydrogenase / fumarate reductase iron-sulfur subunit. | 2-oxoglutarate dehydrogenase E1 component. | 0.860 |
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