STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK42185.1Membrane protein involved in the export of O-antigen and teichoic acid. (494 aa)    
Predicted Functional Partners:
SHK42171.1
Capsular exopolysaccharide family.
 
  
 0.823
SHK42151.1
Capsular exopolysaccharide family.
 
  
 0.817
SHK42255.1
Hypothetical protein.
 
     0.805
SHK42203.1
Acetyltransferase (isoleucine patch superfamily).
  
    0.783
SHK42223.1
Acetyltransferase (isoleucine patch superfamily).
  
    0.783
SHK42238.1
dTDP-L-rhamnose 4-epimerase.
  
    0.776
SHK42294.1
Glycosyltransferase involved in cell wall bisynthesis.
  
    0.735
SHK42272.1
EpsG family protein.
  
    0.734
SHK42362.1
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
  
 0.700
SHK42111.1
NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC.
  
  
 0.656
Your Current Organism:
Chryseobacterium molle
NCBI taxonomy Id: 216903
Other names: C. molle, CCUG 52547, Chryseobacterium molle Herzog et al. 2008, Chryseobacterium sp. DW3, DSM 18016, strain DW3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.