STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sufBFeS assembly protein SufB. (470 aa)    
Predicted Functional Partners:
sufC
FeS assembly ATPase SufC.
 
 0.999
sufD
FeS assembly protein SufD.
 
   
 0.986
sufU
FeS assembly protein.
  
  
 0.979
sufS
Cysteine desulfurase.
 
 
 0.968
AKX33879.1
Hypothetical protein.
       0.534
AKX33880.1
Hypothetical protein.
       0.534
ispD
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Belongs to the IspD/TarI cytidylyltransferase family. IspD subfamily.
     
 0.417
oppF
Oligopeptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
  
  
 0.401
oppF-2
Oligopeptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
  
  
 0.401
Your Current Organism:
Spiroplasma litorale
NCBI taxonomy Id: 216942
Other names: ATCC 43211, S. litorale, strain TN-1
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.