STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKX33916.1Hypothetical protein. (115 aa)    
Predicted Functional Partners:
AKX33914.1
Hypothetical protein.
       0.773
AKX33915.1
ABC transporter permease protein.
       0.773
AKX33913.1
ABC transporter ATP-binding protein.
       0.741
AKX33912.1
Hydrolase.
       0.716
oppD
Oligopeptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
       0.531
oppF
Oligopeptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
       0.531
oppA
Oligopeptide ABC transporter substrate-binding protein.
       0.531
oppC
Oligopeptide ABC transporter permease.
       0.524
oppB
Oligopeptide ABC transporter permease.
       0.499
ileS
isoleucyl-tRNA synthetase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 1 subfamily.
       0.410
Your Current Organism:
Spiroplasma litorale
NCBI taxonomy Id: 216942
Other names: ATCC 43211, S. litorale, strain TN-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.