hit protein (Spiroplasma turonicum) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

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Experiments

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[Homology]

Score

hit

Histidine triad protein. (139 aa)

Predicted Functional Partners:

ALX70296.1

0.839

rpoC

0.727

ALX70840.1

0.712

ALX70988.1

0.712

rpoA

0.697

rpoB

0.664

ALX70481.1

0.652

ALX70480.1

0.649

cshB

0.610

sufS

0.603

Your Current Organism:

Spiroplasma turonicum

NCBI taxonomy Id: 216946
Other names: ATCC 700271, S. turonicum, strain Tab4c

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALX70296.1	cshB	STURO_v1c00270	STURO_v1c03480	Hypothetical protein.	ATP-dependent RNA helicase CshB.	0.955
ALX70296.1	hit	STURO_v1c00270	STURO_v1c02100	Hypothetical protein.	Histidine triad protein.	0.839
ALX70296.1	rpoA	STURO_v1c00270	STURO_v1c09930	Hypothetical protein.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.719
ALX70296.1	rpoB	STURO_v1c00270	STURO_v1c00400	Hypothetical protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.807
ALX70296.1	rpoC	STURO_v1c00270	STURO_v1c00410	Hypothetical protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.802
ALX70296.1	sufS	STURO_v1c00270	STURO_v1c02150	Hypothetical protein.	Cysteine desulfurase.	0.718
ALX70480.1	ALX70481.1	STURO_v1c02110	STURO_v1c02120	Hypothetical protein.	Hypothetical protein.	0.819
ALX70480.1	hit	STURO_v1c02110	STURO_v1c02100	Hypothetical protein.	Histidine triad protein.	0.649
ALX70480.1	sufS	STURO_v1c02110	STURO_v1c02150	Hypothetical protein.	Cysteine desulfurase.	0.556
ALX70481.1	ALX70480.1	STURO_v1c02120	STURO_v1c02110	Hypothetical protein.	Hypothetical protein.	0.819
ALX70481.1	hit	STURO_v1c02120	STURO_v1c02100	Hypothetical protein.	Histidine triad protein.	0.652
ALX70481.1	sufS	STURO_v1c02120	STURO_v1c02150	Hypothetical protein.	Cysteine desulfurase.	0.557
ALX70840.1	ALX70988.1	STURO_v1c05740	STURO_v1c07370	ATP-dependent helicase IRC3.	ATP-dependent helicase IRC3.	0.480
ALX70840.1	hit	STURO_v1c05740	STURO_v1c02100	ATP-dependent helicase IRC3.	Histidine triad protein.	0.712
ALX70840.1	rpoA	STURO_v1c05740	STURO_v1c09930	ATP-dependent helicase IRC3.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.965
ALX70840.1	rpoB	STURO_v1c05740	STURO_v1c00400	ATP-dependent helicase IRC3.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.967
ALX70840.1	rpoC	STURO_v1c05740	STURO_v1c00410	ATP-dependent helicase IRC3.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.836
ALX70988.1	ALX70840.1	STURO_v1c07370	STURO_v1c05740	ATP-dependent helicase IRC3.	ATP-dependent helicase IRC3.	0.480
ALX70988.1	hit	STURO_v1c07370	STURO_v1c02100	ATP-dependent helicase IRC3.	Histidine triad protein.	0.712
ALX70988.1	rpoA	STURO_v1c07370	STURO_v1c09930	ATP-dependent helicase IRC3.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.965