STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APX74152.1Disulfide bond formation protein B; Derived by automated computational analysis using gene prediction method: Protein Homology. (161 aa)    
Predicted Functional Partners:
dsbA
Thiol:disulfide interchange protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.864
glnD
[protein-PII] uridylyltransferase; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen metabolism.
  
    0.786
APX77024.1
Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.723
dsbC
Disulfide bond formation protein DsbC; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily.
 
 
 0.716
APX77574.1
Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.715
APX73979.1
Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.701
APX78010.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.691
APX74206.1
Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.689
APX77586.1
LPS export ABC transporter periplasmic protein LptC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.689
APX77015.1
Thiol reductase thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.677
Your Current Organism:
Achromobacter insolitus
NCBI taxonomy Id: 217204
Other names: A. insolitus, API 201-3-84, Achromobacter insolitus Coenye et al. 2003, Achromobacter sp. AR476-2, Achromobacter sp. KCJK1724, Achromobacter sp. KCJK1731, Achromobacter sp. LMG 6003, Achromobacter sp. UBA1170, Achromobacter sp. UBA1582, CCM 7182, CCUG 47057, LMG 6003, LMG:6003, NCTC 13520, strain Gilardi 3038
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