STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pkn1_1DNA recombination protein RecF; Derived by automated computational analysis using gene prediction method: Protein Homology. (324 aa)    
Predicted Functional Partners:
marA_2
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
atsA_2
Arylsulfatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.696
APX77522.1
Sulfatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.684
APX76849.1
Sulfatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.657
APX74523.1
Sulfatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.655
APX75218.1
Phosphonate monoester hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.576
APX74380.1
Phosphonate monoester hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.569
APX75483.1
Phosphonate monoester hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.555
cls_1
Phospholipase D family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.531
alkB
Alpha-ketoglutarate-dependent dioxygenase AlkB; Oxidative demethylase of N1-methyladenine or N3-methylcytosine DNA lesions; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.527
Your Current Organism:
Achromobacter insolitus
NCBI taxonomy Id: 217204
Other names: A. insolitus, API 201-3-84, Achromobacter insolitus Coenye et al. 2003, Achromobacter sp. AR476-2, Achromobacter sp. KCJK1724, Achromobacter sp. KCJK1731, Achromobacter sp. LMG 6003, Achromobacter sp. UBA1170, Achromobacter sp. UBA1582, CCM 7182, CCUG 47057, LMG 6003, LMG:6003, NCTC 13520, strain Gilardi 3038
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