STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amiC_7tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (462 aa)    
Predicted Functional Partners:
yafL
NlpC/P60 family protein 2; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.670
lolA
Outer-membrane lipoprotein carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
  
 
 
 0.658
nlpD_1
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.644
APX73695.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.633
aarA
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.633
APX78806.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.614
folE2
GTP cyclohydrolase; Converts GTP to 7,8-dihydroneopterin triphosphate.
  
  
 0.612
miaA
tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.
 
   
 0.611
APX78008.1
Cell division protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.611
mltD
Lytic transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.550
Your Current Organism:
Achromobacter insolitus
NCBI taxonomy Id: 217204
Other names: A. insolitus, API 201-3-84, Achromobacter insolitus Coenye et al. 2003, Achromobacter sp. AR476-2, Achromobacter sp. KCJK1724, Achromobacter sp. KCJK1731, Achromobacter sp. LMG 6003, Achromobacter sp. UBA1170, Achromobacter sp. UBA1582, CCM 7182, CCUG 47057, LMG 6003, LMG:6003, NCTC 13520, strain Gilardi 3038
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