ku protein (Achromobacter insolitus) - STRING interaction network

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ku

Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. (301 aa)

Predicted Functional Partners:

APX78260.1

0.992

yecE

0.625

ydaD

0.618

APX78257.1

0.579

APX78258.1

0.566

APX78262.1

0.563

APX78814.1

0.487

APX78679.1

0.481

yetF

0.466

treY

0.457

Your Current Organism:

Achromobacter insolitus

NCBI taxonomy Id: 217204
Other names: A. insolitus, API 201-3-84, Achromobacter insolitus Coenye et al. 2003, Achromobacter sp. AR476-2, Achromobacter sp. KCJK1724, Achromobacter sp. KCJK1731, Achromobacter sp. LMG 6003, Achromobacter sp. UBA1170, Achromobacter sp. UBA1582, CCM 7182, CCUG 47057, LMG 6003, LMG:6003, NCTC 13520, strain Gilardi 3038

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APX78257.1	APX78258.1	BUW96_27835	BUW96_27840	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biotin carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.867
APX78257.1	APX78260.1	BUW96_27835	BUW96_27850	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA ligase D; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.632
APX78257.1	ku	BUW96_27835	BUW96_27845	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.	0.579
APX78258.1	APX78257.1	BUW96_27840	BUW96_27835	Biotin carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.867
APX78258.1	APX78260.1	BUW96_27840	BUW96_27850	Biotin carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA ligase D; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.630
APX78258.1	ku	BUW96_27840	BUW96_27845	Biotin carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.	0.566
APX78260.1	APX78257.1	BUW96_27850	BUW96_27835	DNA ligase D; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.632
APX78260.1	APX78258.1	BUW96_27850	BUW96_27840	DNA ligase D; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biotin carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.630
APX78260.1	APX78262.1	BUW96_27850	BUW96_27860	DNA ligase D; Derived by automated computational analysis using gene prediction method: Protein Homology.	NmrA family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.566
APX78260.1	APX78679.1	BUW96_27850	BUW96_04855	DNA ligase D; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.621
APX78260.1	APX78814.1	BUW96_27850	BUW96_12715	DNA ligase D; Derived by automated computational analysis using gene prediction method: Protein Homology.	DUF305 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.618
APX78260.1	ku	BUW96_27850	BUW96_27845	DNA ligase D; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.	0.992
APX78260.1	treY	BUW96_27850	BUW96_06125	DNA ligase D; Derived by automated computational analysis using gene prediction method: Protein Homology.	Malto-oligosyltrehalose synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.594
APX78260.1	ydaD	BUW96_27850	BUW96_06175	DNA ligase D; Derived by automated computational analysis using gene prediction method: Protein Homology.	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.663
APX78260.1	yecE	BUW96_27850	BUW96_02245	DNA ligase D; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.803
APX78262.1	APX78260.1	BUW96_27860	BUW96_27850	NmrA family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA ligase D; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.566
APX78262.1	ku	BUW96_27860	BUW96_27845	NmrA family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.	0.563
APX78679.1	APX78260.1	BUW96_04855	BUW96_27850	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA ligase D; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.621
APX78679.1	APX78814.1	BUW96_04855	BUW96_12715	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DUF305 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.554
APX78679.1	ku	BUW96_04855	BUW96_27845	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.	0.481

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