STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ypjDHypothetical protein; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (280 aa)    
Predicted Functional Partners:
ffh
Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual componen [...]
       0.727
ampD
N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.690
APX75032.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.491
dsbC
Disulfide bond formation protein DsbC; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily.
 
     0.449
serB_3
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.446
APX77014.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.422
APX77685.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.420
rseB
Siderophore-interacting protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.415
dsbA
Thiol:disulfide interchange protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.414
holA
DNA polymerase III subunit delta; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.411
Your Current Organism:
Achromobacter insolitus
NCBI taxonomy Id: 217204
Other names: A. insolitus, API 201-3-84, Achromobacter insolitus Coenye et al. 2003, Achromobacter sp. AR476-2, Achromobacter sp. KCJK1724, Achromobacter sp. KCJK1731, Achromobacter sp. LMG 6003, Achromobacter sp. UBA1170, Achromobacter sp. UBA1582, CCM 7182, CCUG 47057, LMG 6003, LMG:6003, NCTC 13520, strain Gilardi 3038
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