STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FP2506_09976Unannotated protein. (108 aa)    
Predicted Functional Partners:
FP2506_09971
Unannotated protein.
  
 
 0.994
ligA
Unannotated protein; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.
       0.518
FP2506_10976
Unannotated protein.
  
     0.476
FP2506_11347
Unannotated protein.
  
     0.420
Your Current Organism:
Fulvimarina pelagi
NCBI taxonomy Id: 217511
Other names: ATCC BAA-666, DSM 15513, F. pelagi, Fulvimarina pelagi Cho and Giovannoni 2003 emend. Rathsack et al. 2011, KCTC 12091, strain HTCC2506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.