STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSY_0447LacI-type transcriptional regulator. (357 aa)    
Predicted Functional Partners:
BPSY_0446
Glycosyl hydrolase, family 32; Belongs to the glycosyl hydrolase 32 family.
  
  
 0.811
BPSY_0401
ptsG PTS system, glucose-specific IIABC component.
    
 0.793
BPSY_0481
LacI-type transcriptional regulator.
  
     0.774
BPSY_0648
LacI-type transcriptional regulator.
  
     0.774
BPSY_1814
LacI family transcriptional regulator.
  
     0.774
BPSY_0872
HTH-type transcriptional regulator Reg1.
  
     0.769
BPSY_1639
Glutamate synthase.
    
 
 0.769
BPSY_0607
Thioredoxin reductase.
    
   0.509
guaB
Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
    
   0.509
pheT
phenylalanyl-tRNA synthetase subunit beta; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
    
   0.509
Your Current Organism:
Bifidobacterium psychraerophilum
NCBI taxonomy Id: 218140
Other names: B. psychraerophilum, Bifidobacterium psychraerophilum Simpson et al. 2004, JCM 15958, LMG 21775, LMG:21775, NCIMB 13940, strain T16
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