STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSY_0530Eukaryotic protein kinase domain-containing protein. (689 aa)    
Predicted Functional Partners:
BPSY_0636
Protein phosphatase 2C.
 
 0.950
BPSY_1544
Signal transduction protein GarA.
 
 
 
 0.934
BPSY_0638
FHA domain containing protein.
 
 
 
 0.896
BPSY_0637
FHA domain-containing protein.
 
 
 
 0.840
BPSY_0385
Chain length determinant protein.
    
   0.737
BPSY_2219
Hypothetical protein.
       0.723
BPSY_0632
Serine-threonine protein kinase.
 
 
0.701
BPSY_0531
Thioredoxin.
     
 0.688
BPSY_1835
Serine/threonine protein kinase.
 
  
0.638
BPSY_0978
Tfp pilus assembly protein.
   
   0.573
Your Current Organism:
Bifidobacterium psychraerophilum
NCBI taxonomy Id: 218140
Other names: B. psychraerophilum, Bifidobacterium psychraerophilum Simpson et al. 2004, JCM 15958, LMG 21775, LMG:21775, NCIMB 13940, strain T16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.