Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
BPSY_0535 | BPSY_0835 | LytR cell envelope-related transcriptional attenuator. | Pre-pilin peptidase. | 0.661 |
BPSY_0535 | BPSY_0902 | LytR cell envelope-related transcriptional attenuator. | Hypothetical protein. | 0.756 |
BPSY_0535 | BPSY_0903 | LytR cell envelope-related transcriptional attenuator. | Putative lipoprotein. | 0.732 |
BPSY_0535 | BPSY_1066 | LytR cell envelope-related transcriptional attenuator. | Hypothetical protein. | 0.752 |
BPSY_0535 | BPSY_1161 | LytR cell envelope-related transcriptional attenuator. | DivIVA domain protein. | 0.674 |
BPSY_0535 | BPSY_1187 | LytR cell envelope-related transcriptional attenuator. | CHAP domain containing protein. | 0.627 |
BPSY_0535 | BPSY_1566 | LytR cell envelope-related transcriptional attenuator. | Transporter, probably The general secretory pathway (Sec). | 0.520 |
BPSY_0535 | BPSY_1719 | LytR cell envelope-related transcriptional attenuator. | Hypothetical protein. | 0.492 |
BPSY_0535 | BPSY_1962 | LytR cell envelope-related transcriptional attenuator. | Hypothetical protein. | 0.751 |
BPSY_0535 | BPSY_2127 | LytR cell envelope-related transcriptional attenuator. | Bacterial Ig-like domain, group 4. | 0.707 |
BPSY_0835 | BPSY_0535 | Pre-pilin peptidase. | LytR cell envelope-related transcriptional attenuator. | 0.661 |
BPSY_0835 | BPSY_0902 | Pre-pilin peptidase. | Hypothetical protein. | 0.733 |
BPSY_0835 | BPSY_0903 | Pre-pilin peptidase. | Putative lipoprotein. | 0.714 |
BPSY_0835 | BPSY_1066 | Pre-pilin peptidase. | Hypothetical protein. | 0.744 |
BPSY_0835 | BPSY_1161 | Pre-pilin peptidase. | DivIVA domain protein. | 0.707 |
BPSY_0835 | BPSY_1187 | Pre-pilin peptidase. | CHAP domain containing protein. | 0.737 |
BPSY_0835 | BPSY_1566 | Pre-pilin peptidase. | Transporter, probably The general secretory pathway (Sec). | 0.589 |
BPSY_0835 | BPSY_1719 | Pre-pilin peptidase. | Hypothetical protein. | 0.752 |
BPSY_0835 | BPSY_1962 | Pre-pilin peptidase. | Hypothetical protein. | 0.747 |
BPSY_0835 | BPSY_2127 | Pre-pilin peptidase. | Bacterial Ig-like domain, group 4. | 0.663 |
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