STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pyrEOrotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). (241 aa)    
Predicted Functional Partners:
BPSY_1616
Dihydroorotate dehydrogenase electron transfer subunit.
  
 
 0.999
pyrF
Orotidine 5'-phosphate decarboxylase; Belongs to the OMP decarboxylase family. Type 2 subfamily.
 
 
 0.999
pyrD
Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate.
  
 0.998
BPSY_1313
Orotidine 5'-phosphate decarboxylase.
  
 
 0.990
BPSY_1618
Dihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily.
  
 
 0.989
BPSY_2138
Putative dihydroorotate oxidase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.
  
 0.988
pyrB
Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
  
  
 0.981
BPSY_0103
Dihydroorotate dehydrogenase.
  
 0.972
carB
Carbamoyl-phosphate synthase, large subunit; Belongs to the CarB family.
  
 
 0.947
carA
Carbamoyl phosphate synthase small subunit; Belongs to the CarA family.
  
  
 0.936
Your Current Organism:
Bifidobacterium psychraerophilum
NCBI taxonomy Id: 218140
Other names: B. psychraerophilum, Bifidobacterium psychraerophilum Simpson et al. 2004, JCM 15958, LMG 21775, LMG:21775, NCIMB 13940, strain T16
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