Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BPSY_2012ABC transporter, permease/ATP binding protein, probably Oleandomycin (drug resistance) exporter. (322 aa)    
Predicted Functional Partners:
BPSY_2011
Putative integral membrane transport protein.
 
 
  0.938
BPSY_0441
ABC transporter ATP-binding protein.
 
    
0.726
BPSY_0300
UDP-Glucose Exporter (U-GlcE) family protein, ABC transporter.
  
     0.705
BPSY_1257
ABC superfamily ATP binding cassette transporter, ABC protein.
  
 
  0.685
BPSY_1256
ABC transporter, permease/ATP binding protein.
  
 
  0.649
BPSY_2013
TetR family transcriptional regulator.
 
     0.558
BPSY_2045
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
    
  0.526
BPSY_0182
ABC transporter, ATP-binding protein.
  
     0.517
BPSY_2044
Putative ABC transporter putative membrane protein precursor.
    
  0.512
BPSY_1356
ABC transporter, ATP binding protein.
 
  
0.510
Your Current Organism:
Bifidobacterium psychraerophilum
NCBI taxonomy Id: 218140
Other names: B. psychraerophilum, Bifidobacterium psychraerophilum Simpson et al. 2004, JCM 15958, LMG 21775, LMG:21775, NCIMB 13940, strain T16
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