Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
BPSY_2016Taurine-transporting AtPase. (256 aa)    
Predicted Functional Partners:
BPSY_2017
Putative taurine transport system permease.
 
  0.990
BPSY_1735
Alkanesulfonates transport system permease protein.
 
 0.979
BPSY_2015
ABC transporter substrate-binding protein.
 
  0.976
BPSY_1736
Extracellular solute-binding protein family 3.
 
 0.938
BPSY_1103
ABC transporter substrate-binding protein.
  0.927
BPSY_0122
ABC transporter, permease.
 
  0.920
BPSY_1107
FMN-dependent alpha-hydroxy acid dehydrogenase.
 
  0.850
BPSY_1144
NMT1/THI5 like domain protein.
 
  0.777
BPSY_0121
ABC transporter, substrate-binding protein.
 
  0.776
BPSY_2018
GntR family transcriptional regulator.
       0.723
Your Current Organism:
Bifidobacterium psychraerophilum
NCBI taxonomy Id: 218140
Other names: B. psychraerophilum, Bifidobacterium psychraerophilum Simpson et al. 2004, JCM 15958, LMG 21775, LMG:21775, NCIMB 13940, strain T16
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