STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSY_2090ABC-type transporter, integral membrane subunit. (321 aa)    
Predicted Functional Partners:
BPSY_2091
Extracellular solute-binding protein family 5.
 
 0.976
BPSY_2089
Binding-protein-dependent transport system inner membrane protein.
 
 0.974
BPSY_2088
Monosaccharide-transporting ATPase; Belongs to the ABC transporter superfamily.
 
 
 0.945
BPSY_2108
Oligopeptide/dipeptide ABC transporter ATPase; Belongs to the ABC transporter superfamily.
 
 0.937
BPSY_0327
Glutathione porter, ABC transporter, permease yliD.
 
 0.893
BPSY_1203
Peptide ABC transporter substrate-binding protein.
 
 0.890
BPSY_2109
ABC transporter integral membrane protein.
 
 0.890
BPSY_1866
ABC transporter, permease protein.
 
 0.887
BPSY_2106
ABC transporter periplasmic protein.
  0.873
BPSY_0598
ABC transporter, permease.
 
 0.863
Your Current Organism:
Bifidobacterium psychraerophilum
NCBI taxonomy Id: 218140
Other names: B. psychraerophilum, Bifidobacterium psychraerophilum Simpson et al. 2004, JCM 15958, LMG 21775, LMG:21775, NCIMB 13940, strain T16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.