STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KPL61436.1DNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (102 aa)    
Predicted Functional Partners:
sufC
Iron ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.816
KPL58982.1
Nitrogen fixation protein NifU; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.787
sufD
Fe-S cluster assembly protein SufD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.784
KPL58981.1
Cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
  
 0.778
sufB
Fe-S cluster assembly protein SufB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.764
KPL61437.1
Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.713
KPL61438.1
Phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.634
paaH
phenylacetate-CoA oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.625
KPL61439.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.524
paaA
AAA family ATPase; With PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.498
Your Current Organism:
Bacillus vietnamensis
NCBI taxonomy Id: 218284
Other names: B. vietnamensis, Bacillus vietnamensis Noguchi et al. 2004, JCM 11124, NBRC 101237, NRIC 0531, NRRL B-23890, strain 15-1
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