Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
KPL60349.1Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (344 aa)    
Predicted Functional Partners:
KPL60348.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.608
KPL58692.1
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.541
KPL60521.1
Copper amine oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.531
KPL58817.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.487
KPL60004.1
Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
   0.485
KPL59033.1
Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.485
KPL59203.1
Histone deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.484
KPL61178.1
Protein phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.482
KPL61024.1
Protein phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.482
KPL59435.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.482
Your Current Organism:
Bacillus vietnamensis
NCBI taxonomy Id: 218284
Other names: B. vietnamensis, Bacillus vietnamensis Noguchi et al. 2004, JCM 11124, NBRC 101237, NRIC 0531, NRRL B-23890, strain 15-1
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