STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
asnCAsnC-family transcriptional regulator; Similar to Yersinia pestis regulatory protein AsnC SWALL:Q8ZJT4 (EMBL:AJ414141) (153 aa) fasta scores: E(): 3.5e-48, 86.92% id in 153 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri regulatory protein AsnC SWALL:ASNC_ECOLI (SWALL:P03809) (152 aa) fasta scores: E(): 8e-47, 87.41% id in 151 aa. (153 aa)    
Predicted Functional Partners:
ECA3668
Similar to Bradyrhizobium japonicum transcriptional regulatory protein blr0340 SWALL:BAC45605 (EMBL:AP005936) (167 aa) fasta scores: E(): 1.4e-26, 52.02% id in 148 aa, and to Rhizobium meliloti putative transcription regulator protein r02941 or smc03210 SWALL:Q92LT2 (EMBL:AL591792) (159 aa) fasta scores: E(): 1.6e-20, 45.16% id in 155 aa.
  
     0.767
ECA1157
Similar to Yersinia pestis probable asnc-family regulatory protein ypo3146 or y1038 SWALL:AAM84619 (EMBL:AJ414155) (153 aa) fasta scores: E(): 1.1e-48, 80.13% id in 151 aa, and to Salmonella typhimurium, and Salmonella typhi putative transcriptional regulator ybao or stm0459 or sty0502 SWALL:Q8XGC9 (EMBL:AE008717) (152 aa) fasta scores: E(): 8.9e-47, 78.14% id in 151 aa.
  
     0.764
asnA
Putative asparagine synthetase A; Similar to Escherichia coli aspartate-ammonia ligase AsnA SWALL:ASNA_ECOLI (SWALL:P00963) (330 aa) fasta scores: E(): 2.7e-107, 81.51% id in 330 aa.
 
     0.632
mioC
Putative flavoprotein (initiation of chromosome replication); Similar to Escherichia coli protein MioC SWALL:MIOC_ECOLI (SWALL:P03817) (146 aa) fasta scores: E(): 3.6e-36, 71.23% id in 146 aa, and to Yersinia pestis putative flavoprotein SWALL:AAM83597 (EMBL:AJ414141) (146 aa) fasta scores: E(): 7.7e-38, 72.6% id in 146 aa, and to Salmonella typhimurium, and Salmonella typhi initiation of chromosome replication MioC SWALL:Q8XET7 (EMBL:AE008881) (147 aa) fasta scores: E(): 1.7e-35, 68.7% id in 147 aa.
  
  
 0.542
putA
Bifunctional PutA protein [includes: proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family.
     
 0.490
gltB
Similar to Escherichia coli glutamate synthase [NADPH] large chain precursor GltB or AspB SWALL:GLTB_ECOLI (SWALL:P09831) (1517 aa) fasta scores: E(): 0, 86.75% id in 1495 aa, and to Yersinia pestis glutamate synthase, large subunit GltB SWALL:AAM83722 (EMBL:AE013613) (1535 aa) fasta scores: E(): 0, 90.25% id in 1498 aa.
     
 0.489
cas3
Conserved hypothetical protein; CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Might be involved in the integration of spacer DNA into the CRISPR cassette. In the central section; belongs to the CRISPR-associated helicase Cas3 family.
      
 0.488
csy3
Conserved hypothetical protein; CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Belongs to the CRISPR-associated Csy3 family.
      
 0.472
cas6f
Conserved hypothetical protein; CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Processes pre-crRNA into individual crRNA units.
      
 0.461
csy2
Conserved hypothetical protein; CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Belongs to the CRISPR-associated Csy2 family.
      
 0.460
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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