STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
asnAPutative asparagine synthetase A; Similar to Escherichia coli aspartate-ammonia ligase AsnA SWALL:ASNA_ECOLI (SWALL:P00963) (330 aa) fasta scores: E(): 2.7e-107, 81.51% id in 330 aa. (330 aa)    
Predicted Functional Partners:
asnB
Similar to Escherichia coli asparagine synthetase B [glutamine-hydrolyzing] AsnB or b0674 SWALL:ASNB_ECOLI (SWALL:P22106) (553 aa) fasta scores: E(): 9.7e-211, 91.68% id in 553 aa.
   
 
 0.923
argG
Argininosuccinate synthase; Similar to Escherichia coli, and Escherichia coli O6 argininosuccinate synthase ArgG or b3172 or c3929 SWALL:ASSY_ECOLI (SWALL:P22767) (446 aa) fasta scores: E(): 1.2e-162, 91.89% id in 444 aa; Belongs to the argininosuccinate synthase family. Type 2 subfamily.
   
 
  0.903
pyrB
Aspartate carbamoyltransferase catalytic subunit; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri aspartate carbamoyltransferase catalytic chain PyrB or b4245 or c5345 or z5856 or ecs5222 or sf4245 SWALL:PYRB_ECOLI (SWALL:P00479) (310 aa) fasta scores: E(): 7.7e-100, 85.43% id in 309 aa; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
     
 0.903
aatA
Similar to Rhizobium meliloti aspartate aminotransferase A AatA or r02325 or smc01578 SWALL:AATA_RHIME (SWALL:Q02635) (400 aa) fasta scores: E(): 5.9e-80, 50.62% id in 399 aa, and to Agrobacterium tumefaciens aspartate aminotransferase A AatA or atu4278 or agr_l_1171 SWALL:Q8U821 (EMBL:AE009356) (412 aa) fasta scores: E(): 7.9e-115, 72.04% id in 397 aa.
     
 0.903
purA
Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
    
  0.901
ECA0132
L-asparaginase; Similar to Arabidopsis thaliana L-asparaginase at5g08100 or t22d6_40 SWALL:ASPG_ARATH (SWALL:P50287) (315 aa) fasta scores: E(): 7.9e-38, 44.22% id in 303 aa, and to Escherichia coli putative L-asparaginase precursor ybik or b0828 SWALL:ASGX_ECOLI (SWALL:P37595) (321 aa) fasta scores: E(): 3.2e-73, 65.39% id in 315 aa.
     
  0.900
pyrI
Aspartate carbamoyltransferase regulatory subunit; Involved in allosteric regulation of aspartate carbamoyltransferase.
     
  0.900
aspA1
Aspartate ammonia-lyase; Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri aspartate ammonia-lyase AspA or b4139 or c5222 or sf4293 SWALL:ASPA_ECOLI (SWALL:P04422) (478 aa) fasta scores: E(): 7.8e-167, 88.05% id in 477 aa. Also similar to ECA0621 (91.195% id. in 477 aa overlap).
     
  0.900
aspA2
Aspartate ammonia-lyase 2; Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri aspartate ammonia-lyase AspA or b4139 or c5222 or sf4293 SWALL:ASPA_ECOLI (SWALL:P04422) (478 aa) fasta scores: E(): 3.2e-169, 89.09% id in 477 aa. Also similar to ECA0426 (91.195% id. in 477 aa overlap).
     
  0.900
ansB1
Similar to Erwinia chrysanthemi L-asparaginase precursor AnsB or Asn SWALL:ASPG_ERWCH (SWALL:P06608) (348 aa) fasta scores: E(): 8.8e-95, 77.16% id in 346 aa, and to Salmonella typhimurium putative L-asparaginase stm3598 SWALL:Q8ZLD3 (EMBL:AE008866) (347 aa) fasta scores: E(): 9.5e-87, 70.23% id in 346 aa.
     
  0.900
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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