STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
viaASimilar to Escherichia coli O6 hypothetical protein YieM SWALL:AAN83105 (EMBL:AE016769) (483 aa) fasta scores: E(): 1.1e-124, 63.03% id in 487 aa. (492 aa)    
Predicted Functional Partners:
ravA
Conserved hypothetical protein; Functions as an ATPase. May play a role in metal insertion (metal-chelatase) or as a chaperone; Belongs to the RavA family.
 
  
 0.966
ECA3599
Conserved hypothetical protein; Similar to Escherichia coli, and Escherichia coli O6 hypothetical protein ytfk or b4217 or c5315 SWALL:YTFK_ECOLI (SWALL:P39318) (68 aa) fasta scores: E(): 2.1e-19, 79.1% id in 67 aa, and to Yersinia pestis hypothetical protein ypo3527 or y0656 SWALL:AAM84244 (EMBL:AJ414157) (70 aa) fasta scores: E(): 6.1e-19, 77.27% id in 66 aa.
  
     0.771
crl
Curlin genes transcriptional activator; Binds to the sigma-S subunit of RNA polymerase, activating expression of sigma-S-regulated genes. Stimulates RNA polymerase holoenzyme formation and may bind to several other sigma factors, such as sigma-70 and sigma-32; Belongs to the Crl family.
  
     0.769
atpI
ATP synthase protein I; Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri ATP synthase protein I AtpI or UncI or b3739 or c4667 or sf3819 SWALL:ATPZ_ECOLI (SWALL:P03808) (125 aa) fasta scores: E(): 5.7e-21, 57.02% id in 121 aa.
  
     0.761
ECA2883
Similar to Yersinia pestis hypothetical protein Ypo1864 SWALL:Q8ZF54 (EMBL:AJ414150) (74 aa) fasta scores: E(): 2.3e-16, 67.56% id in 74 aa, and to Salmonella typhimurium, and Salmonella typhi putative cytoplasmic protein yecf or stm1949 or sty2157 SWALL:Q8XEK4 (EMBL:AE008786) (74 aa) fasta scores: E(): 7.4e-16, 62.16% id in 74 aa.
  
     0.754
ECA0637
Similar to Escherichia coli hypothetical protein YqjK SWALL:YQJK_ECOLI (SWALL:Q47710) (99 aa) fasta scores: E(): 1.5e-17, 47.36% id in 95 aa, and to Salmonella typhimurium, and Salmonella typhi putative inner membrane protein YqjK SWALL:Q8XGR1 (EMBL:AE008848) (99 aa) fasta scores: E(): 4.6e-17, 45.26% id in 95 aa.
  
     0.735
zapC
Conserved hypothetical protein; Contributes to the efficiency of the cell division process by stabilizing the polymeric form of the cell division protein FtsZ. Acts by promoting interactions between FtsZ protofilaments and suppressing the GTPase activity of FtsZ.
  
     0.735
ECA4351
Similar to Yersinia pestis putative membrane protein ypo3819 or y0411 SWALL:Q8ZAI2 (EMBL:AJ414159) (208 aa) fasta scores: E(): 7e-55, 66.98% id in 209 aa, and to Salmonella typhimurium, and Salmonella typhi putative inner membrane protein yhhn or stm3575 or sty4236 SWALL:Q8XH18 (EMBL:AE008864) (208 aa) fasta scores: E(): 5.2e-51, 63.63% id in 209 aa.
  
     0.732
ompX
Outer membrane protein; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri outer membrane protein X precursor OmpX or b0814 or c0900 or z1036 or ecs0892 or sf0765 SWALL:OMPX_ECOLI (SWALL:P36546) (171 aa) fasta scores: E(): 9.1e-40, 66.47% id in 173 aa.
  
     0.725
ECA1814
Conserved hypothetical protein; Similar to Salmonella typhimurium, and Salmonella typhi hypothetical protein ycfp or stm1210 or sty1250 SWALL:Q8XGQ0 (EMBL:AE008752) (180 aa) fasta scores: E(): 8.5e-62, 82.77% id in 180 aa, and to Yersinia pestis hypothetical protein ypo1616 or y1776 SWALL:AAM85344 (EMBL:AJ414149) (180 aa) fasta scores: E(): 3.8e-61, 81.11% id in 180 aa; Belongs to the UPF0227 family.
  
     0.717
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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