STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0009Putative exported protein; Similar to Salmonella typhimurium, and Salmonella typhi putative outer membrane proteinYgiW or stm3176 or sty3353 SWALL:Q8XGT5 (EMBL:AE008846) (130 aa) fasta scores: E(): 1.8e-27, 63.35% id in 131 aa, and to Yersinia pestis putative exported protein ypo3027 or y1455 SWALL:Q8ZCG4 (EMBL:AJ414155) (137 aa) fasta scores: E(): 1.4e-20, 50.73% id in 136 aa. (131 aa)    
Predicted Functional Partners:
qseC
Two-component system sensor kinase; Similar to Escherichia coli sensor protein QseC SWALL:QSEC_ECOLI (SWALL:P40719) (449 aa) fasta scores: E(): 7.4e-94, 56.15% id in 447 aa.
 
   
 0.801
ECA3037
Conserved hypothetical protein; Similar to Salmonella typhimurium, and Salmonella typhi putative cytoplasmic protein yfbu or stm2335 or sty2565 SWALL:Q8XGJ0 (EMBL:AE008805) (164 aa) fasta scores: E(): 4.1e-58, 87.19% id in 164 aa, and to Yersinia pestis hypothetical protein Ypo2563 SWALL:Q8ZDJ9 (EMBL:AJ414152) (164 aa) fasta scores: E(): 8.8e-58, 82.92% id in 164 aa; Belongs to the UPF0304 family.
  
     0.613
qseB
Two-component system response regulator; Similar to Escherichia coli transcriptional regulatory protein QseB SWALL:QSEB_ECOLI (SWALL:P52076) (219 aa) fasta scores: E(): 3.1e-59, 68.34% id in 218 aa.
 
  
 0.607
ECA1415
Similar to Yersinia pestis putative membrane protein ypo1527 SWALL:Q8ZFZ6 (EMBL:AJ414148) (528 aa) fasta scores: E(): 2.8e-151, 74.05% id in 528 aa, and to Escherichia coli hypothetical protein yegh or b2063 SWALL:YEGH_ECOLI (SWALL:P76389) (527 aa) fasta scores: E(): 1e-139, 69.18% id in 529 aa.
  
  
 0.562
ECA2384
Putative membrane protein; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein yoae or b1816 or c2222 or z2859 or ecs2525 SWALL:YOAE_ECOLI (SWALL:P76262) (518 aa) fasta scores: E(): 1.6e-140, 72.64% id in 519 aa, and to Salmonella enterica subsp. enterica serovar Typhi Ty2 putative membrane protein t1049 SWALL:AAO68715 (EMBL:AE016837) (519 aa) fasta scores: E(): 2.8e-137, 70.9% id in 519 aa.
  
  
 0.538
ECA3256
Similar to Yersinia pestis putative lipoprotein ypo2915 SWALL:Q8ZCQ6 (EMBL:AJ414154) (331 aa) fasta scores: E(): 7.9e-37, 45.45% id in 253 aa, and to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein yfhg or b2555 or z3831 or ecs3421 or sf2602 SWALL:YFHG_ECOLI (SWALL:P37328) (237 aa) fasta scores: E(): 3.6e-30, 45.61% id in 228 aa.
  
    0.533
ECA3598
Similar to Yersinia pestis putative membrane protein ypo3526 or y0657 SWALL:Q8ZB93 (EMBL:AJ414157) (443 aa) fasta scores: E(): 5.8e-144, 84.38% id in 442 aa, and to Salmonella typhimurium, and Salmonella typhi putative hemolysin-related protein ytfl or stm4407 or sty4766 SWALL:Q8XG66 (EMBL:AE008906) (447 aa) fasta scores: E(): 2.9e-135, 78.81% id in 439 aa.
  
  
 0.489
rbsD
High affinity ribose transport protein; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose.
       0.441
rbsA
Ribose transport ATP-binding protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
       0.441
rbsC
Ribose transport permease system protein; Similar to Salmonella typhimurium, and Salmonella typhi ABC superfamily RbsC SWALL:Q8XFM3 (EMBL:AE008881) (321 aa) fasta scores: E(): 2.1e-96, 89.02% id in 319 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 ribose transport system permease protein RbsC SWALL:RBSC_ECOLI (SWALL:P04984) (321 aa) fasta scores: E(): 2.3e-96, 88.71% id in 319 aa.
       0.441
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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