Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
rbsCRibose transport permease system protein; Similar to Salmonella typhimurium, and Salmonella typhi ABC superfamily RbsC SWALL:Q8XFM3 (EMBL:AE008881) (321 aa) fasta scores: E(): 2.1e-96, 89.02% id in 319 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 ribose transport system permease protein RbsC SWALL:RBSC_ECOLI (SWALL:P04984) (321 aa) fasta scores: E(): 2.3e-96, 88.71% id in 319 aa. (322 aa)    
Predicted Functional Partners:
rbsA
Ribose transport ATP-binding protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 0.999
rbsB
Ribose-binding periplasmic protein; Similar to Salmonella typhimurium, and Salmonella typhi D-ribose-binding periplasmic protein precursor RbsB SWALL:RBSB_SALTY (SWALL:P02926) (296 aa) fasta scores: E(): 4.9e-82, 84.4% id in 295 aa, and to Escherichia coli D-ribose-binding periplasmic protein precursor RbsB SWALL:RBSB_ECOLI (SWALL:P02925) (296 aa) fasta scores: E(): 1.8e-81, 84.06% id in 295 aa.
 0.999
rbsD
High affinity ribose transport protein; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose.
 
  
 0.989
xylG
D-xylose transport ATP-binding protein; Part of the ABC transporter complex XylFGH involved in xylose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Xylose importer (TC 3.A.1.2.4) family.
 0.902
ECA1460
Putative sugar ABC transporter, ATP-binding protein; Similar to Yersinia pestis ATP-binding component of D-ribose high-affinity transport system RbsA or y1150 SWALL:AAM84727 (EMBL:AE013719) (515 aa) fasta scores: E(): 1.9e-156, 80.19% id in 515 aa, and to Caulobacter crescentus sugar ABC transporter, ATP-binding protein cc0860 SWALL:Q9A9V1 (EMBL:AE005763) (515 aa) fasta scores: E(): 5.3e-94, 53.72% id in 510 aa.
 0.902
araG
L-arabinose transport ATP-binding protein; Part of the ABC transporter complex AraFGH involved in arabinose import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Arabinose importer (TC 3.A.1.2.2) family.
 0.901
ECA1459
Putative sugar ABC transporter, periplasmic protein; Similar to Salmonella typhimurium, and Salmonella typhi D-ribose-binding periplasmic protein precursor RbsP or stm3884 or sty3894 SWALL:RBSB_SALTY (SWALL:P02926) (296 aa) fasta scores: E(): 6.8e-24, 35.95% id in 267 aa, and to Yersinia pestis putative sugar-binding periplasmic protein ypo2581 SWALL:Q8ZDI7 (EMBL:AJ414152) (309 aa) fasta scores: E(): 6.5e-87, 80.76% id in 312 aa.
 
 0.900
ECA2719
Similar to Agrobacterium tumefaciens ABC transporter, nucleotide binding/ATPase protein rbsa or atu2819 or agr_c_5112 SWALL:Q8UBN2 (EMBL:AE009229) (521 aa) fasta scores: E(): 7.1e-69, 41.66% id in 492 aa, and to Yersinia pestis putative sugar transport ATP-binding protein MglA or ypo0958 or y3345 SWALL:AAM86895 (EMBL:AJ414145) (499 aa) fasta scores: E(): 2.4e-67, 41.21% id in 495 aa.
 0.889
ECA4235
ABC transporter ATP-binding protein; Similar to Yersinia pestis putative sugar transport system ATP-binding protein ypo3907 or y0329 SWALL:Q8ZAA4 (EMBL:AJ414159) (496 aa) fasta scores: E(): 1.2e-141, 79.51% id in 493 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical ABC transporter ATP-binding protein ytfr or b4228/b4429 or z5839 or ecs5206 SWALL:YTFR_ECOLI (SWALL:P39326) (500 aa) fasta scores: E(): 1.1e-118, 67.82% id in 491 aa.
 0.888
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
  
 0.886
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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