STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbsBRibose-binding periplasmic protein; Similar to Salmonella typhimurium, and Salmonella typhi D-ribose-binding periplasmic protein precursor RbsB SWALL:RBSB_SALTY (SWALL:P02926) (296 aa) fasta scores: E(): 4.9e-82, 84.4% id in 295 aa, and to Escherichia coli D-ribose-binding periplasmic protein precursor RbsB SWALL:RBSB_ECOLI (SWALL:P02925) (296 aa) fasta scores: E(): 1.8e-81, 84.06% id in 295 aa. (295 aa)    
Predicted Functional Partners:
rbsA
Ribose transport ATP-binding protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 
 0.999
rbsC
Ribose transport permease system protein; Similar to Salmonella typhimurium, and Salmonella typhi ABC superfamily RbsC SWALL:Q8XFM3 (EMBL:AE008881) (321 aa) fasta scores: E(): 2.1e-96, 89.02% id in 319 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 ribose transport system permease protein RbsC SWALL:RBSC_ECOLI (SWALL:P04984) (321 aa) fasta scores: E(): 2.3e-96, 88.71% id in 319 aa.
 0.999
rbsD
High affinity ribose transport protein; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose.
 
  
 0.986
rpfA
Two-component sensor kinase and response regulator; Similar to Pectobacterium carotovorum subsp. carotovorum sensor/regulator protein RpfA SWALL:O08235 (EMBL:U62023) (929 aa) fasta scores: E(): 0, 92.88% id in 928 aa, and to Pectobacterium carotovorum subsp. carotovorum sensory kinase ExpS SWALL:O32556 (EMBL:Y13670) (928 aa) fasta scores: E(): 0, 95.36% id in 928 aa.
   
 0.977
ECA3902
Similar to Escherichia coli methyl-accepting chemotaxis protein III Trg or b1421 SWALL:MCP3_ECOLI (SWALL:P05704) (546 aa) fasta scores: E(): 2.9e-86, 54.69% id in 543 aa.
     
 0.944
ECA2720
ABC transporter, permease protein; Similar to Yersinia pestis ribose transport system, permease protein ypo1553 or y2615 SWALL:AAM86169 (EMBL:AJ414149) (331 aa) fasta scores: E(): 2.4e-101, 87.31% id in 331 aa, and to Agrobacterium tumefaciens ABC transporter, membrane spanning protein rbsc or atu4322 or agr_l_1078 SWALL:Q8U7X7 (EMBL:AE009360) (327 aa) fasta scores: E(): 1.8e-31, 34.45% id in 328 aa.
 0.922
ECA1949
Putative sugar ABC transporter, permease protein; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 ribose transport system permease protein RbsC or b3750 or c4678 or z5251 or ecs4692 SWALL:RBSC_ECOLI (SWALL:P04984) (321 aa) fasta scores: E(): 2e-30, 38.92% id in 316 aa, and to Yersinia pestis putative sugar ABC transporter, permease protein ypo3315 or RbsC or y0874 SWALL:Q8ZBT0 (EMBL:AJ414156) (381 aa) fasta scores: E(): 5.3e-111, 87.84% id in 362 aa.
 0.920
ECA1461
Putative sugar ABC transporter, permease protein; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 ribose transport system permease protein RbsC or b3750 or c4678 or z5251 or ecs4692 SWALL:RBSC_ECOLI (SWALL:P04984) (321 aa) fasta scores: E(): 8.2e-43, 43.93% id in 330 aa, and to Yersinia pestis sugar transport system permease protein ypo2583 or rbsc or y1151 SWALL:Q8ZDI5 (EMBL:AJ414152) (342 aa) fasta scores: E(): 8.4e-110, 87.64% id in 340 aa.
 0.913
arcB
Similar to Escherichia coli, and Shigella flexneri aerobic respiration control sensor protein ArcB or b3210 or sf3250 SWALL:ARCB_ECOLI (SWALL:P22763) (778 aa) fasta scores: E(): 8.6e-180, 75.88% id in 788 aa, and to Yersinia pestis aerobic respiration control sensor/response regulatory protein ArcB SWALL:Q8ZB69 (EMBL:AJ414157) (778 aa) fasta scores: E(): 3.6e-190, 80.71% id in 788 aa.
   
 0.912
araH
Similar to Escherichia coli, and Shigella flexneri L-arabinose transport system permease protein AraH or b1898/b1899 or sf1945 SWALL:ARAH_ECOLI (SWALL:P08532) (329 aa) fasta scores: E(): 8.1e-103, 87.19% id in 328 aa.
 0.908
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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