STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0063Conserved hypothetical protein; Similar to Escherichia coli Orf43 protein SWALL:Q9S123 (EMBL:AB024946) (95 aa) fasta scores: E(): 8.3e-33, 89.47% id in 95 aa. (95 aa)    
Predicted Functional Partners:
ECA0064
Conserved hypothetical protein; Similar to Escherichia coli incf plasmid repfib replicon SWALL:Q60256 (EMBL:M26308) (83 aa) fasta scores: E(): 6.4e-27, 87.95% id in 83 aa, and to Escherichia coli Orf44 protein SWALL:Q9S122 (EMBL:AB024946) (83 aa) fasta scores: E(): 8.8e-27, 87.95% id in 83 aa.
 
 
 
 0.960
ECA0325
Similar to Erwinia pyrifoliae putative plasmid stability protein StbD stbD SWALL:AAN04532 (EMBL:AY123045) (84 aa) fasta scores: E(): 8.7e-27, 88.09% id in 84 aa, and to Morganella morganii stability protein StbD SWALL:Q9ZH43 (EMBL:AF072126) (83 aa) fasta scores: E(): 9.5e-18, 63.95% id in 86 aaand to Escherichia coli IncF plasmid RepFIB replicon SWALL:Q60256 (EMBL:M26308) (83 aa) fasta scores: E(): 7.6e-10, 43.59% id in 78 aa.
 
 
 
 0.834
ECA0065
Similar to Pseudomonas aeruginosa hypothetical protein Pa2033 SWALL:Q9I282 (EMBL:AE004629) (302 aa) fasta scores: E(): 7.3e-48, 46.8% id in 297 aa, and to Corynebacterium glutamicum siderophore-interacting protein cgl0665 SWALL:Q8NSK6 (EMBL:AP005276) (299 aa) fasta scores: E(): 1.9e-29, 37.32% id in 292 aa, and to Escherichia coli hypothetical protein YqjH SWALL:YQJH_ECOLI (SWALL:Q46871) (254 aa) fasta scores: E(): 0.0064, 28.05% id in 303 aa.
       0.448
chpA
Putative growth inhibitory protein; Similar to Escherichia coli, and Escherichia coli O157:H7 PemK-like protein 1 ChpA or MazF or ChpaK or b2782 or z4097 or ecs3642 SWALL:CHPA_ECOLI (SWALL:P33645) (111 aa) fasta scores: E(): 5.2e-31, 72.97% id in 111 aa, and to Deinococcus radiodurans ppgpp-regulated growth inhibitor chpa/mazf, putative dr0417 SWALL:Q9RX98 (EMBL:AE001901) (117 aa) fasta scores: E(): 5e-18, 48.21% id in 112 aa.
 
   
 0.409
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.