STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0068Similar to Pseudomonas aeruginosa probable transcriptional regulator pa3225 SWALL:Q9HZ15 (EMBL:AE004745) (309 aa) fasta scores: E(): 1.4e-30, 38.11% id in 286 aa, and to Escherichia coli hypothetical transcriptional regulator YeeY SWALL:YEEY_ECOLI (SWALL:P76369) (309 aa) fasta scores: E(): 7.8e-10, 28.34% id in 247 aa; Belongs to the LysR transcriptional regulatory family. (290 aa)    
Predicted Functional Partners:
padC
Similar to Bacillus subtilis phenolic acid decarboxylase PadC or Pad SWALL:PADC_BACSU (SWALL:O07006) (161 aa) fasta scores: E(): 5.6e-33, 53.16% id in 158 aa, and to Vibrio cholerae probable phenolic acid decarboxylase PadC or vc2240 SWALL:PADC_VIBCH (SWALL:Q9KPX2) (174 aa) fasta scores: E(): 3.2e-46, 63.41% id in 164 aa.
 
     0.787
ECA0916
LysR-family transcriptional regulator; Similar to Listeria innocua transcription activator of glutamate synthase operon GltC SWALL:Q92AS3 (EMBL:AL596170) (295 aa) fasta scores: E(): 8.3e-15, 25.25% id in 293 aa, and to Acinetobacter calcoaceticus ben and cat operon transcriptional regulator BenM SWALL:BENM_ACICA (SWALL:O68014) (304 aa) fasta scores: E(): 1.3e-11, 25% id in 272 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.648
sftR
LysR-family transcriptional regulator; Similar to Pseudomonas putida SftR SWALL:Q9WWU4 (EMBL:AF126201) (304 aa) fasta scores: E(): 1.2e-43, 42.19% id in 301 aa, and to Pseudomonas sp. SDS degradation transcriptional activation protein sdsB SWALL:SDSB_PSES9 (SWALL:P52686) (306 aa) fasta scores: E(): 1.3e-30, 36.53% id in 312 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.616
ECA2973
LysR-family transcriptional regulator; Similar to Rhizobium meliloti putative transcription regulator protein r02971 or smc03122 SWALL:Q92LQ9 (EMBL:AL591792) (315 aa) fasta scores: E(): 2.5e-28, 35.31% id in 286 aa, and to Brucella suis transcriptional regulator, LysR family bra0952 SWALL:AAN34123 (EMBL:AE014588) (304 aa) fasta scores: E(): 2e-27, 31.29% id in 294 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.614
budR
Similar to Klebsiella terrigena bud operon transcriptional regulator BudR SWALL:BUDR_KLETE (SWALL:P52666) (290 aa) fasta scores: E(): 1.3e-47, 48.44% id in 289 aa, and to Salmonella typhimurium putative transcriptional regulator StmR SWALL:Q9RQ20 (EMBL:AF134978) (292 aa) fasta scores: E(): 2.6e-35, 37.71% id in 289 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.601
sftR-2
LysR-family transcriptional regulator; Similar to Pseudomonas putida SftR SWALL:Q9WWU4 (EMBL:AF126201) (304 aa) fasta scores: E(): 6.9e-58, 50.82% id in 303 aa, and to Pseudomonas sp. SDS degradation transcriptional activation protein SdsB SWALL:SDSB_PSES9 (SWALL:P52686) (306 aa) fasta scores: E(): 2.3e-29, 37.58% id in 314 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.573
ECA4427
LysR-family transcriptional regulator; Similar to Agrobacterium tumefaciens regulatory protein NocR or atu6029 or agr_pti_70 SWALL:NOCR_AGRT5 (SWALL:Q00678) (300 aa) fasta scores: E(): 1.4e-28, 35.29% id in 289 aa, and to Rhizobium meliloti octopine catabolism/uptake operon regulatory protein OccR SWALL:OCCR_RHIME (SWALL:P72294) (297 aa) fasta scores: E(): 5.8e-23, 36.58% id in 287 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.562
ECA0955
Similar to Xanthobacter flavus rubisco operon transcriptional regulator CbbR or CfxO SWALL:CBBR_XANFL (SWALL:P25545) (333 aa) fasta scores: E(): 8.9e-19, 30.3% id in 297 aa, and to Agrobacterium tumefaciens transcriptional regulator, LysR family OxyR or atu0873 or agr_c_1597 SWALL:Q8UH12 (EMBL:AE009053) (316 aa) fasta scores: E(): 5.3e-39, 43.88% id in 278 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.539
ECA1479
Similar to Agrobacterium tumefaciens transcriptional regulator, LysR family atu5325 or agr_pat_467 SWALL:Q8UJZ9 (EMBL:AE008954) (300 aa) fasta scores: E(): 6.9e-83, 71.33% id in 300 aa, and to Rhizobium loti transcriptional regulator mll2784 SWALL:Q98HN8 (EMBL:AP003000) (307 aa) fasta scores: E(): 1.2e-37, 39.11% id in 294 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.535
ECA3561
Similar to Streptomyces antibioticus transcriptional regulatory protein AraB AbaB SWALL:ARAB_STRAT (SWALL:P52659) (301 aa) fasta scores: E(): 4e-16, 32.78% id in 302 aa, and to Streptomyces coelicolor putative LysR-family transcriptional regulator sco6801 or sc1a2.10 SWALL:Q9L231 (EMBL:AL939129) (300 aa) fasta scores: E(): 1.2e-09, 30.9% id in 288 aa.
  
     0.529
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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