STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0074Similar to Corynebacterium glutamicum ABC-type transporter, permease component cgl2438 SWALL:Q8NMX5 (EMBL:AP005281) (313 aa) fasta scores: E(): 3.9e-60, 55.15% id in 301 aa, and to Salmonella typhi hypothetical ABC transporter permease protein YliC SWALL:Q8Z862 (EMBL:AL627268) (306 aa) fasta scores: E(): 6.1e-30, 36.03% id in 308 aa. (314 aa)    
Predicted Functional Partners:
ECA0073
ABC transporter permease protein; Similar to Corynebacterium efficiens putative transport protein ce2332 SWALL:BAC19142 (EMBL:AP005222) (305 aa) fasta scores: E(): 2.3e-58, 62.22% id in 270 aa, and to Escherichia coli hypothetical ABC transporter permease protein YliD SWALL:YLID_ECOLI (SWALL:P75799) (303 aa) fasta scores: E(): 1.3e-33, 38.34% id in 266 aa.
  
 0.964
ECA0075
ABC-type transporter, substrate binding protein; Similar to Corynebacterium glutamicum ABC-type transporter, periplasmic component cgl2439 SWALL:Q8NMX4 (EMBL:AP005281) (569 aa) fasta scores: E(): 1.1e-87, 47.85% id in 535 aa, and to Corynebacterium efficiens putative peptide binding protein ce2334 SWALL:BAC19144 (EMBL:AP005222) (615 aa) fasta scores: E(): 1.6e-86, 47.29% id in 535 aa.
 
 
 0.943
ECA0070
Conserved hypothetical protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
 
     0.908
ECA0072
Similar to Corynebacterium glutamicum ABC-type transporter, duplicated ATPase component cgl2436 SWALL:Q8NMX7 (EMBL:AP005281) (547 aa) fasta scores: E(): 8.2e-93, 54.2% id in 535 aa, and to Escherichia coli hypothetical ABC transporter ATP-binding protein YejF SWALL:YEJF_ECOLI (SWALL:P33916) (529 aa) fasta scores: E(): 4.8e-65, 42.8% id in 528 aa.
 
     0.906
ECA0071
Putative monooxygenase; Similar to Bradyrhizobium japonicum Bll6902 protein SWALL:BAC52167 (EMBL:AP005960) (378 aa) fasta scores: E(): 3.4e-73, 58.99% id in 339 aa, and to Bradyrhizobium japonicum LuxA-like protein bll7033 SWALL:BAC52298 (EMBL:AP005960) (408 aa) fasta scores: E(): 3.7e-14, 28.77% id in 358 aa.
 
     0.889
ECA0446
Similar to Xanthomonas axonopodis ABC transporter permease OppC SWALL:Q8PP30 (EMBL:AE011717) (294 aa) fasta scores: E(): 8.7e-38, 43.26% id in 282 aa.
  
 0.849
ECA2961
Similar to Brucella abortus putative ABC transporter permease protein c batn1953.orf22 SWALL:Q8VQK5 (EMBL:AF454951) (296 aa) fasta scores: E(): 6.2e-46, 43.86% id in 269 aa, and to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu3267 or agr_l_3102 SWALL:Q8UAV0 (EMBL:AE009256) (291 aa) fasta scores: E(): 3.6e-45, 44.44% id in 270 aa.
  
 0.839
ECA1006
Similar to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu3435 or agr_l_2782 SWALL:Q8UAD9 (EMBL:AE009274) (341 aa) fasta scores: E(): 2.7e-69, 61.92% id in 302 aa, and to Rhizobium meliloti probable ABC transporter, permease protein ra1137 or sma2083 SWALL:Q92XV3 (EMBL:AE007299) (332 aa) fasta scores: E(): 5.3e-66, 65.92% id in 270 aa.
  
 0.838
ECA4074
Similar to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu3458 or agr_l_2741 SWALL:Q8UAB6 (EMBL:AE009276) (295 aa) fasta scores: E(): 5.9e-75, 64.18% id in 282 aa, and to Rhizobium meliloti putative dipeptide transport system permease ABC transporter protein dppc2 or r02411 or smc01527 SWALL:Q92N28 (EMBL:AL591790) (310 aa) fasta scores: E(): 4.7e-66, 54.8% id in 312 aa.
  
 0.837
ECA0135
ABC transporter permease protein; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 dipeptide transport system permease protein DppC or b3542 or c4357 or z4959 or ecs4422 SWALL:DPPC_ECOLI (SWALL:P37315) (300 aa) fasta scores: E(): 5.1e-44, 45.26% id in 285 aa, and to Ralstonia solanacearum probable transmembrane ABC transporter protein rsc1382 or rs04665 SWALL:Q8XZL3 (EMBL:AL646064) (299 aa) fasta scores: E(): 3.3e-62, 57.71% id in 298 aa.
  
 0.835
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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