STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0081Similar to Yersinia pestis putative acetyltransferase ypo4075 SWALL:Q8Z9W4 (EMBL:AJ414160) (151 aa) fasta scores: E(): 1.8e-28, 51.37% id in 146 aa, and to Escherichia coli hypothetical acetyltransferase YiaC SWALL:YIAC_ECOLI (SWALL:P37664) (146 aa) fasta scores: E(): 2.2e-22, 45% id in 140 aa. (147 aa)    
Predicted Functional Partners:
tag
Similar to Escherichia coli DNA-3-methyladenine glycosylase I Tag or b3549 SWALL:3MG1_ECOLI (SWALL:P05100) (187 aa) fasta scores: E(): 3.8e-53, 69.23% id in 182 aa.
       0.815
ECA0724
Similar to Yersinia pestis putative acetyltransferase ypo3476 SWALL:AAM84296 (EMBL:AJ414157) (168 aa) fasta scores: E(): 2.7e-45, 70.55% id in 180 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical acetyltransferase YhbS SWALL:YHBS_ECOLI (SWALL:P45473) (167 aa) fasta scores: E(): 2.1e-40, 64.24% id in 179 aa.
 
  
 0.531
ECA3639
Putative acyltransferase; Similar to Salmonella typhimurium, and Salmonella typhi putative acyltransferase ElaA or stm2312 or sty2543 SWALL:Q8XG97 (EMBL:AE008803) (153 aa) fasta scores: E(): 1.5e-28, 54.54% id in 143 aa, and to Escherichia coli, and Shigella flexneri protein ElaA or b2267 or sf2346 SWALL:ELAA_ECOLI (SWALL:P52077) (153 aa) fasta scores: E(): 1.5e-27, 51.74% id in 143 aa.
  
  
 0.434
rimI
Ribosomal-protein-alanine acetyltransferase; Acetylates the N-terminal alanine of ribosomal protein S18.
      
 0.402
ECA0083
Putative membrane protein; Similar to Pseudomonas putida conserved hypothetical protein pp5143 SWALL:AAN70708 (EMBL:AE016793) (260 aa) fasta scores: E(): 1e-36, 48.3% id in 236 aa.
       0.401
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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