STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mtlDSimilar to Escherichia coli mannitol-1-phosphate 5-dehydrogenase MtlD or b3600 SWALL:MTLD_ECOLI (SWALL:P09424) (382 aa) fasta scores: E(): 5.7e-108, 77.48% id in 382 aa. (382 aa)    
Predicted Functional Partners:
mtlA
Similar to Escherichia coli PTS system, mannitol-specific IIabc component MtlA or b3599 SWALL:PTMA_ECOLI (SWALL:P00550) (637 aa) fasta scores: E(): 1.1e-188, 81.63% id in 637 aa.
 
 
 0.999
manA
Similar to Escherichia coli mannose-6-phosphate isomerase ManA or Pmi or b1613 SWALL:MANA_ECOLI (SWALL:P00946) (391 aa) fasta scores: E(): 1e-110, 71.28% id in 390 aa.
 
  
 0.953
scrK
Fructokinase; Similar to Escherichia coli fructokinase CscK SWALL:SCRK_ECOLI (SWALL:P40713) (307 aa) fasta scores: E(): 4.5e-67, 60.39% id in 303 aa, and to Erwinia amylovora fructokinase ScrK SWALL:Q9F4A1 (EMBL:AJ250722) (308 aa) fasta scores: E(): 1.6e-65, 60.06% id in 303 aa; Belongs to the carbohydrate kinase PfkB family.
    
 0.952
ECA2352
Putative 6-phosphofructokinase isozyme II; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis; Belongs to the phosphofructokinase type A (PFKA) family.
    
 0.948
pfkA
6-phosphofructokinase isozyme I; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis.
    
 0.948
ECA2398
Similar to Yersinia pestis putative phosphatase y1890 SWALL:AAM85457 (EMBL:AE013792) (221 aa) fasta scores: E(): 3.1e-56, 67.72% id in 220 aa, and to Escherichia coli hypothetical protein ynic or b1727 SWALL:YNIC_ECOLI (SWALL:P77247) (222 aa) fasta scores: E(): 2.1e-55, 68.32% id in 221 aa.
    
  0.945
ECA3036
Similar to Yersinia pestis putative haloacid dehalogenase-like hydrolase ypo2562 or y1625 SWALL:AAM85194 (EMBL:AJ414152) (220 aa) fasta scores: E(): 1.3e-56, 69.9% id in 216 aa, and to Shigella flexneri putative phosphatase yfbt or sf2369 SWALL:AAN43882 (EMBL:AE015253) (216 aa) fasta scores: E(): 1.4e-55, 68.83% id in 215 aa.
    
  0.945
glpX
Putative glycerol metabolic protein; Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri protein GlpX or b3925 or c4877 or sf4003 SWALL:GLPX_ECOLI (SWALL:P28860) (336 aa) fasta scores: E(): 7e-102, 86.6% id in 336 aa.
     
 0.945
ECA1107
Similar to Escherichia coli hypothetical protein YajF or b0394 SWALL:YAJF_ECOLI (SWALL:P23917) (302 aa) fasta scores: E(): 5e-91, 75.74% id in 301 aa, and to Salmonella typhimurium putative sugar kinase/putative transcriptional regulator YajF or stm0393 SWALL:Q8ZRE5 (EMBL:AE008713) (302 aa) fasta scores: E(): 6.6e-91, 75.66% id in 300 aa.
     
 0.944
fbp
Fructose-1,6-bisphosphatase; Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri fructose-1,6-bisphosphatase Fbp or Fdp or b4232 or c5329 or sf4258 SWALL:F16P_ECOLI (SWALL:P09200) (332 aa) fasta scores: E(): 2.6e-110, 86.82% id in 334 aa.
     
  0.944
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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