STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylBXylulose kinase; Similar to Escherichia coli xylulose kinase XylB SWALL:XYLB_ECOLI (SWALL:P09099) (484 aa) fasta scores: E(): 7.7e-141, 73.81% id in 485 aa. (485 aa)    
Predicted Functional Partners:
xylA
Putative D-xylose isomerase; Similar to Escherichia coli xylose isomerase XylA SWALL:XYLA_ECOLI (SWALL:P00944) (440 aa) fasta scores: E(): 1.5e-155, 82.42% id in 438 aa.
 
 
 0.996
araD
Similar to Escherichia coli L-ribulose-5-phosphate 4-epimerase AraD or b0061 SWALL:ARAD_ECOLI (SWALL:P08203) (231 aa) fasta scores: E(): 5.3e-74, 77.48% id in 231 aa.
  
 
 0.933
rpe
Ribulose-phosphate 3-epimerase; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri ribulose-phosphate 3-epimerase Rpe or Dod or b3386 or c4156 or z4739 or ecs4228 or sf3404 SWALL:RPE_ECOLI (SWALL:P32661) (225 aa) fasta scores: E(): 5.1e-71, 83.92% id in 224 aa.
 
  
 0.928
rhaM
Conserved hypothetical protein; Involved in the anomeric conversion of L-rhamnose.
  
  
 0.718
rhaA
Similar to Escherichia coli L-rhamnose isomerase RhaA or b3903 SWALL:RHAA_ECOLI (SWALL:P32170) (419 aa) fasta scores: E(): 5.5e-137, 79.66% id in 418 aa.
  
  
 0.673
apsI
Putative xylose isomerase; Involved in catabolism of D-apiose. Catalyzes isomerization of D-apiose to apulose.
 
  
 0.625
tktA1
Transketolase 1; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.
  
 
 0.586
tktA2
Transketolase 1; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.
  
 
 0.586
ECA1396
Putative exported protein; Similar to Agrobacterium tumefaciens hypothetical protein atu4376 or agr_l_982 SWALL:Q8U7S3 (EMBL:AE009366) (284 aa) fasta scores: E(): 2e-44, 43.5% id in 285 aa, and to Rhizobium meliloti hypothetical protein r01924 or smc04254 SWALL:Q92P69 (EMBL:AL591788) (253 aa) fasta scores: E(): 6.9e-22, 32.63% id in 239 aa.
  
 
 0.558
xylR
Xylose operon regulatory protein; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 xylose operon regulatory protein XylR SWALL:XYLR_ECOLI (SWALL:P37390) (392 aa) fasta scores: E(): 2.5e-127, 81.02% id in 390 aa.
 
 
 
 0.545
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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