STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylFSimilar to Escherichia coli D-xylose-binding periplasmic protein precursor XylF or XylT or b3566 SWALL:XYLF_ECOLI (SWALL:P37387) (330 aa) fasta scores: E(): 2e-88, 77.87% id in 330 aa. (332 aa)    
Predicted Functional Partners:
xylH
Xylose transport system permease; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri xylose transport system permease protein XylH SWALL:XYLH_ECOLI (SWALL:P37389) (393 aa) fasta scores: E(): 3.6e-116, 82.39% id in 392 aa.
 
 0.996
xylG
D-xylose transport ATP-binding protein; Part of the ABC transporter complex XylFGH involved in xylose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Xylose importer (TC 3.A.1.2.4) family.
 
 0.992
ECA4233
Putative ABC transporter permease protein; Similar to Yersinia pestis putative sugar transport system permease ypo3905 or y0331 SWALL:AAM83922 (EMBL:AJ414159) (330 aa) fasta scores: E(): 5e-92, 82.18% id in 320 aa, and to Escherichia coli hypothetical ABC transporter permease protein yjff or b4231 SWALL:YJFF_ECOLI (SWALL:P37772) (331 aa) fasta scores: E(): 4.3e-82, 70.93% id in 320 aa.
  
 0.766
xylR
Xylose operon regulatory protein; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 xylose operon regulatory protein XylR SWALL:XYLR_ECOLI (SWALL:P37390) (392 aa) fasta scores: E(): 2.5e-127, 81.02% id in 390 aa.
 
   
 0.724
ECA4234
Putative ABC transporter permease protein; Similar to Yersinia pestis putative sugar transport system permease ypo3906 or y0330 SWALL:AAM83921 (EMBL:AJ414159) (339 aa) fasta scores: E(): 1.4e-95, 83.89% id in 329 aa, and to Escherichia coli hypothetical ABC transporter permease protein ytft or b4230 SWALL:YTFT_ECOLI (SWALL:P39328) (341 aa) fasta scores: E(): 9.1e-79, 71.11% id in 322 aa.
 
  
 0.723
ECA4235
ABC transporter ATP-binding protein; Similar to Yersinia pestis putative sugar transport system ATP-binding protein ypo3907 or y0329 SWALL:Q8ZAA4 (EMBL:AJ414159) (496 aa) fasta scores: E(): 1.2e-141, 79.51% id in 493 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical ABC transporter ATP-binding protein ytfr or b4228/b4429 or z5839 or ecs5206 SWALL:YTFR_ECOLI (SWALL:P39326) (500 aa) fasta scores: E(): 1.1e-118, 67.82% id in 491 aa.
 
 0.712
xylA
Putative D-xylose isomerase; Similar to Escherichia coli xylose isomerase XylA SWALL:XYLA_ECOLI (SWALL:P00944) (440 aa) fasta scores: E(): 1.5e-155, 82.42% id in 438 aa.
 
  
 0.704
araH
Similar to Escherichia coli, and Shigella flexneri L-arabinose transport system permease protein AraH or b1898/b1899 or sf1945 SWALL:ARAH_ECOLI (SWALL:P08532) (329 aa) fasta scores: E(): 8.1e-103, 87.19% id in 328 aa.
 
  
 0.689
araG
L-arabinose transport ATP-binding protein; Part of the ABC transporter complex AraFGH involved in arabinose import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Arabinose importer (TC 3.A.1.2.2) family.
 
 0.644
ECA1949
Putative sugar ABC transporter, permease protein; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 ribose transport system permease protein RbsC or b3750 or c4678 or z5251 or ecs4692 SWALL:RBSC_ECOLI (SWALL:P04984) (321 aa) fasta scores: E(): 2e-30, 38.92% id in 316 aa, and to Yersinia pestis putative sugar ABC transporter, permease protein ypo3315 or RbsC or y0874 SWALL:Q8ZBT0 (EMBL:AJ414156) (381 aa) fasta scores: E(): 5.3e-111, 87.84% id in 362 aa.
  
 0.631
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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