STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylHXylose transport system permease; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri xylose transport system permease protein XylH SWALL:XYLH_ECOLI (SWALL:P37389) (393 aa) fasta scores: E(): 3.6e-116, 82.39% id in 392 aa. (393 aa)    
Predicted Functional Partners:
xylG
D-xylose transport ATP-binding protein; Part of the ABC transporter complex XylFGH involved in xylose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Xylose importer (TC 3.A.1.2.4) family.
 
 0.990
xylF
Similar to Escherichia coli D-xylose-binding periplasmic protein precursor XylF or XylT or b3566 SWALL:XYLF_ECOLI (SWALL:P37387) (330 aa) fasta scores: E(): 2e-88, 77.87% id in 330 aa.
 
 0.987
araG
L-arabinose transport ATP-binding protein; Part of the ABC transporter complex AraFGH involved in arabinose import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Arabinose importer (TC 3.A.1.2.2) family.
  
 0.802
rbsA
Ribose transport ATP-binding protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
  
 0.799
ECA1460
Putative sugar ABC transporter, ATP-binding protein; Similar to Yersinia pestis ATP-binding component of D-ribose high-affinity transport system RbsA or y1150 SWALL:AAM84727 (EMBL:AE013719) (515 aa) fasta scores: E(): 1.9e-156, 80.19% id in 515 aa, and to Caulobacter crescentus sugar ABC transporter, ATP-binding protein cc0860 SWALL:Q9A9V1 (EMBL:AE005763) (515 aa) fasta scores: E(): 5.3e-94, 53.72% id in 510 aa.
  
 0.798
ECA4235
ABC transporter ATP-binding protein; Similar to Yersinia pestis putative sugar transport system ATP-binding protein ypo3907 or y0329 SWALL:Q8ZAA4 (EMBL:AJ414159) (496 aa) fasta scores: E(): 1.2e-141, 79.51% id in 493 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical ABC transporter ATP-binding protein ytfr or b4228/b4429 or z5839 or ecs5206 SWALL:YTFR_ECOLI (SWALL:P39326) (500 aa) fasta scores: E(): 1.1e-118, 67.82% id in 491 aa.
  
 0.797
ECA2719
Similar to Agrobacterium tumefaciens ABC transporter, nucleotide binding/ATPase protein rbsa or atu2819 or agr_c_5112 SWALL:Q8UBN2 (EMBL:AE009229) (521 aa) fasta scores: E(): 7.1e-69, 41.66% id in 492 aa, and to Yersinia pestis putative sugar transport ATP-binding protein MglA or ypo0958 or y3345 SWALL:AAM86895 (EMBL:AJ414145) (499 aa) fasta scores: E(): 2.4e-67, 41.21% id in 495 aa.
  
 0.796
ECA1948
Putative sugar ABC transporter, ATP-binding protein; Similar to Escherichia coli D-xylose transport ATP-binding protein XylG or b3567 SWALL:XYLG_ECOLI (SWALL:P37388) (513 aa) fasta scores: E(): 3.6e-64, 41.23% id in 502 aa, and to Yersinia pestis putative sugar ABC transporter, ATP-binding protein ypo3316 or y0873 SWALL:AAM84458 (EMBL:AJ414156) (507 aa) fasta scores: E(): 2.3e-134, 78.52% id in 503 aa.
     0.769
ECA1459
Putative sugar ABC transporter, periplasmic protein; Similar to Salmonella typhimurium, and Salmonella typhi D-ribose-binding periplasmic protein precursor RbsP or stm3884 or sty3894 SWALL:RBSB_SALTY (SWALL:P02926) (296 aa) fasta scores: E(): 6.8e-24, 35.95% id in 267 aa, and to Yersinia pestis putative sugar-binding periplasmic protein ypo2581 SWALL:Q8ZDI7 (EMBL:AJ414152) (309 aa) fasta scores: E(): 6.5e-87, 80.76% id in 312 aa.
  
 0.747
ECA4236
Similar to Escherichia coli ABC transporter periplasmic binding protein ytfq precursor ytfq or b4227 SWALL:YTFQ_ECOLI (SWALL:P39325) (318 aa) fasta scores: E(): 9.2e-84, 75.78% id in 318 aa, and to Yersinia pestis putative periplasmic protein ypo3908 or y0328 SWALL:AAM83919 (EMBL:AJ414159) (318 aa) fasta scores: E(): 9.3e-98, 88.36% id in 318 aa.
  
 0.717
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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