STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pmeBSimilar to Erwinia chrysanthemi pectinesterase B precursor PemB SWALL:PMEB_ERWCH (SWALL:Q47474) (433 aa) fasta scores: E(): 8.6e-100, 65.48% id in 394 aa, and to Erwinia carotovora pectinesterase b pemB SWALL:PMEB_ERWCA (SWALL:P55743) (178 aa) fasta scores: E(): 7.6e-61, 91.47% id in 176 aa. (398 aa)    
Predicted Functional Partners:
pehN
Similar to Erwinia chrysanthemi putative polygalacturonase precursor PehN SWALL:Q8KKH7 (EMBL:AJ292044) (457 aa) fasta scores: E(): 9.4e-151, 80.13% id in 458 aa; Belongs to the glycosyl hydrolase 28 family.
 
   
 0.764
ECA0108
Putative membrane protein; Similar to Shigella flexneri conserved hypothetical protein YdgC SWALL:AAN43211 (EMBL:AE015184) (111 aa) fasta scores: E(): 9.5e-27, 65.42% id in 107 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein YdgC SWALL:YDGC_ECOLI (SWALL:P52110) (111 aa) fasta scores: E(): 9.5e-27, 65.42% id in 107 aa.
 
     0.748
pehA
Endo-polygalacturonase; Similar to Erwinia carotovora endo-polygalacturonase precursor PehA SWALL:PGL2_ERWCA (SWALL:P26509) (402 aa) fasta scores: E(): 1.4e-143, 97.76% id in 402 aa, and to Erwinia carotovora Peh precursor SWALL:Q9S5V7 (EMBL:AB022681) (402 aa) fasta scores: E(): 1.3e-140, 95.77% id in 402 aa; Belongs to the glycosyl hydrolase 28 family.
 
   
 0.732
pemA
Similar to Erwinia chrysanthemi pectinesterase a precursor PemA or Pem SWALL:PMEA_ERWCH (SWALL:P07863) (366 aa) fasta scores: E(): 3.5e-98, 70.47% id in 359 aa.
 
     0.713
ECA1071
Conserved hypothetical protein; Similar to Escherichia coli O157:H7 orf, hypothetical protein z4045 or ecs3591 SWALL:Q8X7Z8 (EMBL:AE005501) (78 aa) fasta scores: E(): 7.7e-25, 81.33% id in 75 aa, and to Salmonella typhimurium, and Salmonella typhi putative cytoplasmic protein stm2923 or sty3048 SWALL:Q8XEM2 (EMBL:AE008833) (78 aa) fasta scores: E(): 2.1e-24, 78.66% id in 75 aa.
  
     0.697
pelA
Pectate lyase I; Involved in maceration and soft-rotting of plant tissue.
 
   
 0.632
pelB
Pectate lyase II; Involved in maceration and soft-rotting of plant tissue.
 
   
 0.630
pptA
Similar to Escherichia coli hypothetical protein ydce or b1461 SWALL:YDCE_ECOLI (SWALL:P31992) (77 aa) fasta scores: E(): 6e-11, 46.66% id in 75 aa, and to Xylella fastidiosa hypothetical protein Xf1725 SWALL:Q9PCQ3 (EMBL:AE003996) (82 aa) fasta scores: E(): 0.0047, 35.13% id in 74 aa; Belongs to the 4-oxalocrotonate tautomerase family. PptA subfamily.
  
     0.624
ECA1873
Putative glycosyl hydrolase exoenzyme; Similar to Escherichia coli O6 hypothetical protein yiel or c4641 SWALL:AAN83073 (EMBL:AE016769) (400 aa) fasta scores: E(): 4.7e-106, 70.57% id in 401 aa, and to Shigella flexneri putative xylanase yiel or sf3738 SWALL:AAN45183 (EMBL:AE015381) (402 aa) fasta scores: E(): 5.9e-105, 70.07% id in 401 aa.
  
     0.602
pelZ
Pectate lyase; Similar to Erwinia chrysanthemi pectate lyase precursor PelZ SWALL:P94773 (EMBL:X97119) (420 aa) fasta scores: E(): 5.1e-120, 72.53% id in 426 aa.
 
   
 0.593
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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